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3RGM
Asym. Unit
Info
Asym.Unit (191 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPIN-LABELED BTUB T156R1
Authors
:
P. S. Horanyi, D. M. Freed, M. C. Wiener, D. S. Cafiso
Date
:
08 Apr 11 (Deposition) - 26 Oct 11 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Barrel, Receptor, Transporter, Cobalamins, Tonb, Outer Membrane, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Freed, A. K. Khan, P. S. Horanyi, D. S. Cafiso
Molecular Origin Of Electron Paramagnetic Resonance Line Shapes On β -Barrel Membrane Proteins: The Local Solvation Environment Modulates Spin-Label Configuration
Biochemistry V. 50 8792 2011
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
3a: S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5... (MTNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
C8E
6
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
MG
9
Ligand/Ion
MAGNESIUM ION
3
MTN
1
Ligand/Ion
S-[(1-OXYL-2,2,5,5-TETRAMETHYL-2,5-DIHYDRO-1H-PYRROL-3-YL)METHYL] METHANESULFONOTHIOATE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:358 , ARG A:367 , GLY A:369 , THR A:370 , TRP A:371 , PHE A:470 , THR A:472 , GLY A:473 , HOH A:644 , HOH A:646 , C8E A:805
BINDING SITE FOR RESIDUE C8E A 800
02
AC2
SOFTWARE
THR A:338 , ASP A:361 , SER A:363 , TYR A:383 , PHE A:422 , HOH A:637 , HOH A:687
BINDING SITE FOR RESIDUE C8E A 801
03
AC3
SOFTWARE
ILE A:261 , ASN A:302 , ALA A:313 , GLY A:314 , TRP A:431 , ILE A:433 , ALA A:466 , C8E A:804
BINDING SITE FOR RESIDUE C8E A 802
04
AC4
SOFTWARE
ILE A:311 , GLY A:344 , LEU A:345 , GLN A:346 , PHE A:353 , GLY A:355 , ALA A:356 , THR A:373
BINDING SITE FOR RESIDUE C8E A 803
05
AC5
SOFTWARE
TRP A:214 , TYR A:256 , ILE A:261 , TYR A:436 , GLY A:463 , C8E A:802
BINDING SITE FOR RESIDUE C8E A 804
06
AC6
SOFTWARE
TRP A:371 , TYR A:505 , C8E A:800
BINDING SITE FOR RESIDUE C8E A 805
07
AC7
SOFTWARE
TYR A:256
BINDING SITE FOR RESIDUE MG A 595
08
AC8
SOFTWARE
TYR A:522 , THR A:525
BINDING SITE FOR RESIDUE MG A 596
09
AC9
SOFTWARE
HIS A:174 , HIS A:176 , HIS A:449 , MG A:602
BINDING SITE FOR RESIDUE MG A 601
10
BC1
SOFTWARE
HIS A:174 , HIS A:176 , HIS A:449 , MG A:601
BINDING SITE FOR RESIDUE MG A 602
11
BC2
SOFTWARE
SER A:263
BINDING SITE FOR RESIDUE MG A 603
12
BC3
SOFTWARE
CYS A:156 , GLN A:157 , LEU A:168
BINDING SITE FOR RESIDUE MTN A 604
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TONB_DEPENDENT_REC_2 (A:577-594)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TONB_DEPENDENT_REC_2
PS01156
TonB-dependent receptor proteins signature 2.
BTUB_ECOLI
597-614
1
A:577-594
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3rgma_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Ligand-gated protein channel
(29)
Protein domain
:
Outer membrane cobalamin transporter BtuB
(12)
Escherichia coli [TaxId: 562]
(12)
1a
d3rgma_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (191 KB)
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