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3RFZ
Asym. Unit
Info
Asym.Unit (395 KB)
Biol.Unit 1 (199 KB)
Biol.Unit 2 (198 KB)
Biol.Unit 3 (389 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIMD USHER BOUND TO ITS COGNATE FIMC:FIMH SUBSTRATE
Authors
:
G. Phan, H. Remaut, A. Lebedev, S. Geibel, G. Waksman
Date
:
07 Apr 11 (Deposition) - 01 Jun 11 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: A,B,C,D,E,F (1x)
Keywords
:
Beta-Barrel, Pilus Assembly, Outer-Membrane, Cell Adhesion-Transport Protein-Chaperone Complex, Cell Adhesion-Transport-Chaperone Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Phan, H. Remaut, T. Wang, W. J. Allen, K. F. Pirker, A. Lebedev, N. S. Henderson, S. Geibel, E. Volkan, J. Yan, M. B. Kunze, J. S. Pinkner B. Ford, C. W. Kay, H. Li, S. J. Hultgren, D. G. Thanassi, G. Waksman
Crystal Structure Of The Fimd Usher Bound To Its Cognate Fimc-Fimh Substrate.
Nature V. 474 49 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR B:639 , LYS B:646
BINDING SITE FOR RESIDUE SO4 B 844
2
AC2
SOFTWARE
SER B:121 , ASN B:122 , ARG B:123 , GLN B:249 , ASN B:288
BINDING SITE FOR RESIDUE SO4 B 845
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_FIMC_ECOLI_002 (V18V, chain C/F, )
2: VAR_FIMC_ECOLI_003 (A174A, chain C/F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FIMC_ECOLI_002
*
E
54
V
FIMC_ECOLI
---
---
C/F
V
18
V
2
UniProt
VAR_FIMC_ECOLI_003
*
T
210
A
FIMC_ECOLI
---
---
C/F
A
174
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (C:75-92,F:75-92,C:75-92,F:75-92)
2: FIMBRIAL_USHER (B:280-290,E:280-290)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
FIMC_ECOL6
111-128
2
C:75-92
F:75-92
FIMC_ECOLI
111-128
2
C:75-92
F:75-92
2
FIMBRIAL_USHER
PS01151
Fimbrial biogenesis outer membrane usher protein signature.
FIMD_ECOLI
325-335
2
B:280-290
E:280-290
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d3rfzc2 (C:121-205)
1b: SCOP_d3rfzf2 (F:121-205)
2a: SCOP_d3rfza1 (A:1-158)
2b: SCOP_d3rfza2 (A:159-279)
2c: SCOP_d3rfzd1 (D:1-158)
2d: SCOP_d3rfzd2 (D:159-279)
3a: SCOP_d3rfzc1 (C:1-120)
3b: SCOP_d3rfzf1 (F:1-120)
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Protein Domains
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)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Escherichia coli [TaxId: 562]
(2)
1a
d3rfzc2
C:121-205
1b
d3rfzf2
F:121-205
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Pilus subunits
(59)
Protein domain
:
automated matches
(16)
Escherichia coli [TaxId: 562]
(4)
2a
d3rfza1
A:1-158
2b
d3rfza2
A:159-279
2c
d3rfzd1
D:1-158
2d
d3rfzd2
D:159-279
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
automated matches
(3)
Escherichia coli [TaxId: 562]
(1)
3a
d3rfzc1
C:1-120
3b
d3rfzf1
F:1-120
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_Fimbrial_3rfzD01 (D:146-279)
1b: PFAM_Fimbrial_3rfzD02 (D:146-279)
2a: PFAM_Pili_assembly_N_3rfzF01 (F:1-121)
2b: PFAM_Pili_assembly_N_3rfzF02 (F:1-121)
3a: PFAM_FimH_man_bind_3rfzD03 (D:3-147)
3b: PFAM_FimH_man_bind_3rfzD04 (D:3-147)
4a: PFAM_Pili_assembly_C_3rfzF03 (F:140-201)
4b: PFAM_Pili_assembly_C_3rfzF04 (F:140-201)
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Clan
:
Adhesin
(36)
Family
:
Fimbrial
(23)
Escherichia coli
(15)
1a
Fimbrial-3rfzD01
D:146-279
1b
Fimbrial-3rfzD02
D:146-279
Clan
:
E-set
(290)
Family
:
Pili_assembly_N
(20)
Escherichia coli O6
(1)
2a
Pili_assembly_N-3rfzF01
F:1-121
2b
Pili_assembly_N-3rfzF02
F:1-121
Clan
:
no clan defined [family: FimH_man-bind]
(6)
Family
:
FimH_man-bind
(6)
Escherichia coli
(2)
3a
FimH_man-bind-3rfzD03
D:3-147
3b
FimH_man-bind-3rfzD04
D:3-147
Clan
:
no clan defined [family: Pili_assembly_C]
(20)
Family
:
Pili_assembly_C
(20)
Escherichia coli O6
(1)
4a
Pili_assembly_C-3rfzF03
F:140-201
4b
Pili_assembly_C-3rfzF04
F:140-201
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Asym.Unit (395 KB)
Header - Asym.Unit
Biol.Unit 1 (199 KB)
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