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3RFV
Biol. Unit 1
Info
Asym.Unit (151 KB)
Biol.Unit 1 (286 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF URONATE DEHYDROGENASE FROM AGROBACTERIUM TUMEFACIENS COMPLEXED WITH NADH AND PRODUCT
Authors
:
T. Parkkinen, J. Rouvinen
Date
:
07 Apr 11 (Deposition) - 15 Jun 11 (Release) - 17 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Ternary Complex, Rossmann Fold, Nad Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Parkkinen, H. Boer, J. Janis, M. Andberg, M. Penttila, A. Koivula, J. Rouvinen
Crystal Structure Of Uronate Dehydrogenase From Agrobacterium Tumefaciens.
J. Biol. Chem. V. 286 27294 2011
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: GALACTARO-1,5-LACTONE (15La)
1b: GALACTARO-1,5-LACTONE (15Lb)
1c: GALACTARO-1,5-LACTONE (15Lc)
2a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
2c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
15L
6
Ligand/Ion
GALACTARO-1,5-LACTONE
2
NAI
6
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3
PO4
16
Ligand/Ion
PHOSPHATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , ALA A:12 , GLY A:13 , GLN A:14 , LEU A:15 , ASP A:34 , LEU A:35 , SER A:36 , CYS A:50 , ASP A:51 , LEU A:52 , LEU A:71 , GLY A:72 , GLY A:73 , SER A:75 , GLY A:86 , ALA A:109 , SER A:110 , SER A:111 , TYR A:136 , LYS A:140 , ILE A:163 , GLY A:164 , SER A:165 , CYS A:166 , HOH A:295 , HOH A:296 , HOH A:369 , HOH A:376 , HOH A:381 , 15L A:401 , HOH A:499 , HOH A:737 , HOH A:757
BINDING SITE FOR RESIDUE NAI A 400
02
AC2
SOFTWARE
SER A:75 , SER A:111 , ASN A:112 , HIS A:113 , TYR A:136 , GLY A:164 , SER A:165 , ARG A:174 , PHE A:258 , HOH A:292 , HOH A:376 , NAI A:400 , HOH A:415
BINDING SITE FOR RESIDUE 15L A 401
03
AC3
SOFTWARE
GLY A:64 , ALA A:100 , HIS A:101 , HOH A:620 , GLU C:28 , ASN C:44 , HOH C:748
BINDING SITE FOR RESIDUE PO4 A 268
04
AC4
SOFTWARE
ARG A:22 , HIS A:182 , HOH A:318 , HOH A:708
BINDING SITE FOR RESIDUE PO4 A 269
05
AC5
SOFTWARE
ARG A:123 , GLY A:125 , ASP A:215 , HOH A:321 , HOH A:470 , HOH C:353
BINDING SITE FOR RESIDUE PO4 A 270
06
AC6
SOFTWARE
PRO A:119 , ARG A:131 , HOH A:298 , HOH A:437
BINDING SITE FOR RESIDUE PO4 A 271
07
AC7
SOFTWARE
GLY B:10 , ALA B:12 , GLY B:13 , GLN B:14 , LEU B:15 , ASP B:34 , LEU B:35 , SER B:36 , CYS B:50 , ASP B:51 , LEU B:52 , LEU B:71 , GLY B:72 , GLY B:73 , SER B:75 , GLY B:86 , ALA B:109 , SER B:110 , SER B:111 , TYR B:136 , LYS B:140 , ILE B:163 , GLY B:164 , SER B:165 , CYS B:166 , HOH B:282 , HOH B:297 , HOH B:341 , HOH B:371 , HOH B:388 , 15L B:401 , HOH B:613
BINDING SITE FOR RESIDUE NAI B 400
08
AC8
SOFTWARE
SER B:75 , SER B:111 , ASN B:112 , HIS B:113 , TYR B:136 , GLY B:164 , SER B:165 , ARG B:174 , PHE B:258 , NAI B:400 , HOH B:473
BINDING SITE FOR RESIDUE 15L B 401
09
AC9
SOFTWARE
ALA B:63 , GLY B:64 , HIS B:101
BINDING SITE FOR RESIDUE PO4 B 268
10
BC1
SOFTWARE
LYS B:265 , GLN B:266 , HOH B:360 , HOH B:593 , TYR C:92
BINDING SITE FOR RESIDUE PO4 B 269
11
BC2
SOFTWARE
GLY C:10 , ALA C:12 , GLY C:13 , GLN C:14 , LEU C:15 , ASP C:34 , LEU C:35 , SER C:36 , CYS C:50 , ASP C:51 , LEU C:52 , LEU C:71 , GLY C:72 , GLY C:73 , SER C:75 , GLY C:86 , ALA C:109 , SER C:110 , SER C:111 , TYR C:136 , LYS C:140 , ILE C:163 , GLY C:164 , SER C:165 , CYS C:166 , HOH C:277 , HOH C:286 , HOH C:287 , HOH C:361 , HOH C:378 , 15L C:401 , HOH C:458 , HOH C:533 , HOH C:545 , HOH C:706
BINDING SITE FOR RESIDUE NAI C 400
12
BC3
SOFTWARE
SER C:75 , SER C:111 , ASN C:112 , HIS C:113 , TYR C:136 , GLY C:164 , SER C:165 , ARG C:174 , PHE C:258 , NAI C:400 , HOH C:458 , HOH C:608 , HOH C:628
BINDING SITE FOR RESIDUE 15L C 401
13
BC4
SOFTWARE
ALA C:63 , GLY C:64 , HIS C:101 , HOH C:625 , HOH C:760 , HOH C:763
BINDING SITE FOR RESIDUE PO4 C 268
14
BC5
SOFTWARE
ARG C:22 , HIS C:182 , HOH C:343 , HOH C:622
BINDING SITE FOR RESIDUE PO4 C 269
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SAPs(SNPs)/Variants
(0, 0)
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