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3RF4
Biol. Unit 1
Info
Asym.Unit (70 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (125 KB)
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(1)
Title
:
ANCYLOSTOMA CEYLANICUM MIF IN COMPLEX WITH FUROSEMIDE
Authors
:
Y. Cho, E. Lolis
Date
:
05 Apr 11 (Deposition) - 12 Oct 11 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Keywords
:
Protein-Small Molecule Complex, Isomerase, Isomerase-Isomerase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Cho, J. J. Vermeire, J. S. Merkel, L. Leng, X. Du, R. Bucala, M. Cappello, E. Lolis
Drug Repositioning And Pharmacophore Identification In The Discovery Of Hookworm Mif Inhibitors.
Chem. Biol. V. 18 1089 2011
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: 5-(AMINOSULFONYL)-4-CHLORO-2-[(2-F... (FUNa)
2b: 5-(AMINOSULFONYL)-4-CHLORO-2-[(2-F... (FUNb)
2c: 5-(AMINOSULFONYL)-4-CHLORO-2-[(2-F... (FUNc)
3a: IMIDAZOLE (IMDa)
3b: IMIDAZOLE (IMDb)
3c: IMIDAZOLE (IMDc)
3d: IMIDAZOLE (IMDd)
3e: IMIDAZOLE (IMDe)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
FUN
3
Ligand/Ion
5-(AMINOSULFONYL)-4-CHLORO-2-[(2-FURYLMETHYL)AMINO]BENZOIC ACID
3
IMD
5
Ligand/Ion
IMIDAZOLE
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:1 , MET A:2 , LYS A:32 , ARG A:36 , SER A:63 , ILE A:64 , VAL A:106 , PHE A:108 , VAL A:113 , HOH A:259 , HOH A:456 , HIS C:49 , ILE C:95
BINDING SITE FOR RESIDUE FUN A 201
02
AC2
SOFTWARE
GLY A:44 , ARG A:46 , ASP B:11 , ZN B:119 , ACT B:122
BINDING SITE FOR RESIDUE IMD A 117
03
AC3
SOFTWARE
ASP A:11 , ACT A:120 , HOH A:243 , IMD C:118
BINDING SITE FOR RESIDUE ZN A 118
04
AC4
SOFTWARE
GLU A:20 , ASP A:24
BINDING SITE FOR RESIDUE ZN A 119
05
AC5
SOFTWARE
ASP A:11 , ZN A:118 , HOH A:365 , ARG C:46 , IMD C:118
BINDING SITE FOR RESIDUE ACT A 120
06
AC6
SOFTWARE
ASP A:92
BINDING SITE FOR RESIDUE ACT A 121
07
AC7
SOFTWARE
HIS A:49 , ILE A:95 , PRO B:1 , MET B:2 , LYS B:32 , ARG B:36 , ILE B:64 , VAL B:106 , PHE B:108 , VAL B:113 , HOH B:458 , HOH B:459
BINDING SITE FOR RESIDUE FUN B 202
08
AC8
SOFTWARE
ASP A:70 , GLY B:44 , ARG B:46 , ACT B:121 , ASP C:11 , ZN C:119
BINDING SITE FOR RESIDUE IMD B 117
09
AC9
SOFTWARE
ASP B:71 , HOH B:155 , HOH B:292
BINDING SITE FOR RESIDUE IMD B 118
10
BC1
SOFTWARE
IMD A:117 , ASP B:11 , ACT B:122 , HOH B:242
BINDING SITE FOR RESIDUE ZN B 119
11
BC2
SOFTWARE
GLU B:20 , ASP B:24 , GLU C:20 , ASP C:24
BINDING SITE FOR RESIDUE ZN B 120
12
BC3
SOFTWARE
ASP A:70 , ARG B:46 , ARG B:53 , IMD B:117 , ASP C:11 , ZN C:119
BINDING SITE FOR RESIDUE ACT B 121
13
BC4
SOFTWARE
ARG A:46 , ARG A:53 , IMD A:117 , ASP B:11 , ZN B:119
BINDING SITE FOR RESIDUE ACT B 122
14
BC5
SOFTWARE
ASP B:92
BINDING SITE FOR RESIDUE ACT B 123
15
BC6
SOFTWARE
HIS B:49 , ILE B:95 , PRO C:1 , MET C:2 , LYS C:32 , ARG C:36 , ILE C:64 , VAL C:106 , PHE C:108 , VAL C:113 , HOH C:460 , HOH C:463
BINDING SITE FOR RESIDUE FUN C 203
16
BC7
SOFTWARE
ALA C:116
BINDING SITE FOR RESIDUE IMD C 117
17
BC8
SOFTWARE
ASP A:11 , ZN A:118 , ACT A:120 , GLY C:44 , ARG C:46
BINDING SITE FOR RESIDUE IMD C 118
18
BC9
SOFTWARE
ASP A:70 , IMD B:117 , ACT B:121 , ASP C:11
BINDING SITE FOR RESIDUE ZN C 119
19
CC1
SOFTWARE
ASP C:71 , ACT C:121
BINDING SITE FOR RESIDUE ZN C 120
20
CC2
SOFTWARE
MET C:30 , ASN C:31 , ALA C:66 , SER C:68 , ASP C:71 , ZN C:120 , HOH C:245
BINDING SITE FOR RESIDUE ACT C 121
21
CC3
SOFTWARE
ASP C:92
BINDING SITE FOR RESIDUE ACT C 122
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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All PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3rf4a_ (A:)
1b: SCOP_d3rf4b_ (B:)
1c: SCOP_d3rf4c_ (C:)
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Protein Domains
(
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Tautomerase/MIF
(104)
Superfamily
:
Tautomerase/MIF
(104)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Ancylostoma ceylanicum [TaxId: 53326]
(3)
1a
d3rf4a_
A:
1b
d3rf4b_
B:
1c
d3rf4c_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (70 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (125 KB)
Header - Biol.Unit 2
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