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3RF3
Biol. Unit 1
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Asym.Unit (394 KB)
Biol.Unit 1 (195 KB)
Biol.Unit 2 (196 KB)
Biol.Unit 3 (389 KB)
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(1)
Title
:
SHIGELLA IPAA-VBS3 IN COMPLEX WITH HUMAN VINCULIN
Authors
:
H. Park, A. Sharff, T. Izard
Date
:
05 Apr 11 (Deposition) - 27 Apr 11 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Alpha-Helix Bundle Domain, Cytoskeletal Protein, Protein-Protein Interactions, Cell Adhesion, Cytoskeleton, Bacterial Toxins, Pathogen-Host Interactions, Ipaa, Talin, F-Actin, Phosphatidylinositol 4 5-Bisphosphate, Cytosol, Focal Adhesion, Protein Binding-Toxin Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Park, C. Valencia-Gallardo, A. Sharff, G. Tran Van Nhieu, T. Izar
Novel Vinculin Binding Site Of The Ipaa Invasin Of Shigella
J. Biol. Chem. V. 286 23214 2011
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
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No.
Name
Count
Type
Full Name
1
CAC
1
Ligand/Ion
CACODYLATE ION
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:176 , LYS A:199 , HOH A:582 , HOH A:618
BINDING SITE FOR RESIDUE CAC A 300
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_037667 (V234L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_037667
V
234
L
VINC_HUMAN
Polymorphism
17853882
A
V
234
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: VINCULIN_1 (A:162-182)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VINCULIN_1
PS00663
Vinculin family talin-binding region signature.
VINC_HUMAN
162-182
1
A:162-182
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3rf3a1 (A:2-128)
1b: SCOP_d3rf3b1 (B:1-128)
1c: SCOP_d3rf3b2 (B:129-258)
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Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
alpha-catenin/vinculin-like
(25)
Family
:
alpha-catenin/vinculin
(24)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3rf3a1
A:2-128
1b
d3rf3b1
B:1-128
1c
d3rf3b2
B:129-258
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CATH Domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SipA_3rf3D01 (D:488-511)
1b: PFAM_SipA_3rf3D02 (D:488-511)
2a: PFAM_Vinculin_3rf3B01 (B:3-258)
2b: PFAM_Vinculin_3rf3B02 (B:3-258)
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Clan
:
no clan defined [family: SipA]
(1)
Family
:
SipA
(1)
Shigella flexneri
(1)
1a
SipA-3rf3D01
D:488-511
1b
SipA-3rf3D02
D:488-511
Clan
:
no clan defined [family: Vinculin]
(16)
Family
:
Vinculin
(16)
Homo sapiens (Human)
(8)
2a
Vinculin-3rf3B01
B:3-258
2b
Vinculin-3rf3B02
B:3-258
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Asymmetric Unit 1
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Asym.Unit (394 KB)
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