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3RDH
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (152 KB)
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(1)
Title
:
X-RAY INDUCED COVALENT INHIBITION OF 14-3-3
Authors
:
J. R. Horton, A. K. Upadhyay, H. Fu, X. Cheng
Date
:
01 Apr 11 (Deposition) - 28 Sep 11 (Release) - 12 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.39
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Phosphoser/Thr-Mimetic Agent, Phosphoserine/Threonine-Recognition Protein, Signaling Protein-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Zhao, Y. Du, J. R. Horton, A. K. Upadhyay, B. Lou, Y. Bai, X. Zhang, L. Du, M. Li, B. Wang, L. Zhang, J. T. Barbieri, F. R. Khuri, X. Cheng, H. F
Discovery And Structural Characterization Of A Small Molecule 14-3-3 Protein-Protein Interaction Inhibitor.
Proc. Natl. Acad. Sci. Usa V. 108 16212 2011
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 4-[(E)-{4-FORMYL-5-HYDROXY-6-METHY... (3RDa)
1b: 4-[(E)-{4-FORMYL-5-HYDROXY-6-METHY... (3RDb)
1c: 4-[(E)-{4-FORMYL-5-HYDROXY-6-METHY... (3RDc)
1d: 4-[(E)-{4-FORMYL-5-HYDROXY-6-METHY... (3RDd)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
2c: NICKEL (II) ION (NIc)
2d: NICKEL (II) ION (NId)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3RD
4
Ligand/Ion
4-[(E)-{4-FORMYL-5-HYDROXY-6-METHYL-3-[(PHOSPHONOOXY)METHYL]PYRIDIN-2-YL}DIAZENYL]BENZOIC ACID
2
NI
4
Ligand/Ion
NICKEL (II) ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:120 , LEU A:172 , ASN A:173 , ILE A:217 , LEU A:220
BINDING SITE FOR RESIDUE 3RD A 246
2
AC2
SOFTWARE
GLY A:-2 , SER A:-1 , HIS A:0 , MET A:1
BINDING SITE FOR RESIDUE NI A 247
3
AC3
SOFTWARE
LYS B:49 , LYS B:120 , GLY B:169 , ASN B:173 , ILE B:217
BINDING SITE FOR RESIDUE 3RD B 246
4
AC4
SOFTWARE
SER B:-1 , GLY B:-2 , HIS B:0 , MET B:1
BINDING SITE FOR RESIDUE NI B 247
5
AC5
SOFTWARE
LYS C:49 , LYS C:120 , GLY C:169 , ASN C:173 , HOH C:258
BINDING SITE FOR RESIDUE 3RD C 246
6
AC6
SOFTWARE
GLY C:-2 , SER C:-1 , HIS C:0 , MET C:1
BINDING SITE FOR RESIDUE NI C 247
7
AC7
SOFTWARE
LYS D:49 , LYS D:120 , GLY D:169 , ASN D:173 , HOH D:267
BINDING SITE FOR RESIDUE 3RD D 246
8
AC8
SOFTWARE
SER D:-1 , GLY D:-2 , HIS D:0 , MET D:1
BINDING SITE FOR RESIDUE NI D 247
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: 1433_1 (A:41-51,B:41-51,C:41-51,D:41-51)
2: 1433_2 (A:211-230,B:211-230,C:211-230,D:21...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
1433_1
PS00796
14-3-3 proteins signature 1.
1433Z_HUMAN
41-51
4
A:41-51
B:41-51
C:41-51
D:41-51
2
1433_2
PS00797
14-3-3 proteins signature 2.
1433Z_HUMAN
211-230
4
A:211-230
B:211-230
C:211-230
D:211-230
[
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Exons
(5, 20)
Info
All Exons
Exon 1.8e (A:1-98 | B:1-98 | C:1-98 | D:1-98)
Exon 1.12b (A:99-140 | B:99-140 | C:99-140 | D...)
Exon 1.13b (A:140-194 | B:140-194 | C:140-194 ...)
Exon 1.13e (A:195-226 | B:195-226 | C:195-226 ...)
Exon 1.14l (A:227-230 | B:227-230 | C:227-230 ...)
View:
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All Exon Boundaries
1: Boundary 1.3f/1.8e
2: Boundary 1.8e/1.12b
3: Boundary 1.12b/1.13b
4: Boundary 1.13b/1.13e
5: Boundary 1.13e/1.14l
6: Boundary 1.14l/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3f
ENST00000395958
3f
ENSE00001523393
chr8:
101964357-101964157
201
1433Z_HUMAN
-
0
0
-
-
1.8e
ENST00000395958
8e
ENSE00002177146
chr8:
101961128-101960824
305
1433Z_HUMAN
1-98
98
4
A:1-98
B:1-98
C:1-98
D:1-98
98
98
98
98
1.12b
ENST00000395958
12b
ENSE00001088722
chr8:
101937267-101937144
124
1433Z_HUMAN
99-140
42
4
A:99-140
B:99-140
C:99-140
D:99-140
42
42
42
42
1.13b
ENST00000395958
13b
ENSE00001088724
chr8:
101936526-101936363
164
1433Z_HUMAN
140-194
55
4
A:140-194
B:140-194
C:140-194
D:140-194
55
55
55
55
1.13e
ENST00000395958
13e
ENSE00001756559
chr8:
101936278-101936183
96
1433Z_HUMAN
195-226
32
4
A:195-226
B:195-226
C:195-226
D:195-226
32
32
32
32
1.14l
ENST00000395958
14l
ENSE00001693646
chr8:
101932980-101930807
2174
1433Z_HUMAN
227-245
19
4
A:227-230
B:227-230
C:227-230
D:227-230
4
4
4
4
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3rdha_ (A:)
1b: SCOP_d3rdhc_ (C:)
1c: SCOP_d3rdhd_ (D:)
1d: SCOP_d3rdhb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
14-3-3 protein
(60)
Family
:
14-3-3 protein
(60)
Protein domain
:
zeta isoform
(10)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3rdha_
A:
1b
d3rdhc_
C:
1c
d3rdhd_
D:
1d
d3rdhb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Asymmetric Unit 1
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Example Commands
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
Biol.Unit 3 (152 KB)
Header - Biol.Unit 3
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