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3RDA
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
HUMAN CYCLOPHILIN D COMPLEXED WITH A FRAGMENT
Authors
:
L. Colliandre, H. Ahmed-Belkacem, Y. Bessin, J. M. Pawlotsky, J. F. Gui
Date
:
01 Apr 11 (Deposition) - 21 Mar 12 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.07
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Beta Barrel, Prolyl Cis/Trans Isomerase, Mitochondria, Inhibitor, Isomerase-Isomerase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ahmed-Belkacem, L. Colliandre, N. Ahnou, Q. Nevers, M. Gelin, Y. Bessin, R. Brillet, O. Cala, D. Douguet, W. Bourguet, I. Krimm, J. M. Pawlotsky, J. F. Guichou
Fragment-Based Discovery Of A New Family Of Non-Peptidic Small-Molecule Cyclophilin Inhibitors With Potent Antiviral Activities.
Nat Commun V. 7 12777 2016
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOa)
1b: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOb)
1c: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOc)
1d: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOd)
1e: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOe)
1f: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOf)
1g: 3-METHYL-1,2-OXAZOL-5-AMINE (MIOg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MIO
7
Ligand/Ion
3-METHYL-1,2-OXAZOL-5-AMINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG X:97 , PHE X:102 , MET X:103 , PHE X:155 , MIO X:208 , HOH X:311 , HOH X:382 , HOH X:454 , HOH X:459
BINDING SITE FOR RESIDUE MIO X 1
2
AC2
SOFTWARE
MIO X:1 , ARG X:97 , GLN X:105 , ALA X:143 , ASN X:144 , HIS X:168 , HOH X:383
BINDING SITE FOR RESIDUE MIO X 208
3
AC3
SOFTWARE
GLY X:114 , ARG X:124 , ASN X:144 , GLN X:153 , HOH X:434 , HOH X:508
BINDING SITE FOR RESIDUE MIO X 209
4
AC4
SOFTWARE
ASN X:55 , GLY X:56 , PHE X:102 , TRP X:163 , HOH X:319 , HOH X:352
BINDING SITE FOR RESIDUE MIO X 210
5
AC5
SOFTWARE
HOH X:20 , GLY X:44 , ASN X:45 , ALA X:68 , HOH X:253 , HOH X:354 , HOH X:355 , HOH X:356
BINDING SITE FOR RESIDUE MIO X 211
6
AC6
SOFTWARE
LEU X:81 , CYS X:82 , THR X:83 , GLY X:89 , TYR X:90 , LYS X:91 , CYS X:203 , MIO X:213 , HOH X:238 , HOH X:271 , HOH X:377 , HOH X:379
BINDING SITE FOR RESIDUE MIO X 212
7
AC7
SOFTWARE
GLY X:84 , GLY X:87 , PHE X:88 , GLY X:89 , LYS X:91 , MIO X:212 , HOH X:377
BINDING SITE FOR RESIDUE MIO X 213
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (X:49-205)
2: CSA_PPIASE_1 (X:90-107)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIF_HUMAN
49-205
1
X:49-205
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIF_HUMAN
90-107
1
X:90-107
[
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Exons
(6, 6)
Info
All Exons
Exon 1.1b (X:44-65)
Exon 1.2 (X:66-76)
Exon 1.3a (X:76-105)
Exon 1.4a (X:106-138)
Exon 1.5 (X:138-163)
Exon 1.6c (X:163-207)
View:
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2
3: Boundary 1.2/1.3a
4: Boundary 1.3a/1.4a
5: Boundary 1.4a/1.5
6: Boundary 1.5/1.6c
7: Boundary 1.6c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000225174
1b
ENSE00001554110
chr10:
81107234-81107499
266
PPIF_HUMAN
1-65
65
1
X:44-65
22
1.2
ENST00000225174
2
ENSE00000998348
chr10:
81108832-81108862
31
PPIF_HUMAN
66-76
11
1
X:66-76
11
1.3a
ENST00000225174
3a
ENSE00000710825
chr10:
81109421-81109509
89
PPIF_HUMAN
76-105
30
1
X:76-105
30
1.4a
ENST00000225174
4a
ENSE00000429803
chr10:
81111243-81111339
97
PPIF_HUMAN
106-138
33
1
X:106-138
33
1.5
ENST00000225174
5
ENSE00000710835
chr10:
81112073-81112148
76
PPIF_HUMAN
138-163
26
1
X:138-163
26
1.6c
ENST00000225174
6c
ENSE00001136191
chr10:
81113463-81115093
1631
PPIF_HUMAN
163-207
45
1
X:163-207
45
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3rdax_ (X:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
(25)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3rdax_
X:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain X
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (74 KB)
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