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Getting 'Exon' information from database.
3RCD
Asym. Unit
Info
Asym.Unit (383 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (95 KB)
Biol.Unit 3 (99 KB)
Biol.Unit 4 (95 KB)
Biol.Unit 5 (189 KB)
Biol.Unit 6 (189 KB)
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(1)
Title
:
HER2 KINASE DOMAIN COMPLEXED WITH TAK-285
Authors
:
K. Aertgeerts, R. Skene, S. Sogabe
Date
:
30 Mar 11 (Deposition) - 23 Nov 11 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.21
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Kinase Domain, Receptor, Transferase, Tyrosine-Protein Kinase, Tyrosine Kinase Inhibitor, Transferase-Transferase Inhibitor Complex, Anti-Oncogene, Cell Cycle, Disease, Mutation, Atp-Binding, Nucleotide-Binding, Glycoprotein, Phosphoprotein, Membrane, Secreted
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ishikawa, M. Seto, H. Banno, Y. Kawakita, M. Oorui, T. Taniguchi, Y. Ohta, T. Tamura, A. Nakayama, H. Miki, H. Kamiguchi, T. Tanaka, N. Habuka, S. Sogabe, J. Yano, K. Aertgeerts, K. Kamiyama
Design And Synthesis Of Novel Human Epidermal Growth Factor Receptor 2 (Her2)/Epidermal Growth Factor Receptor (Egfr) Dual Inhibitors Bearing A Pyrrolo[3, 2-D]Pyrimidine Scaffold
J. Med. Chem. V. 54 8030 2011
[
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]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-{2-[4-({3-CHLORO-4-[3-(TRIFLUORO... (03Pa)
1b: N-{2-[4-({3-CHLORO-4-[3-(TRIFLUORO... (03Pb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
03P
2
Ligand/Ion
N-{2-[4-({3-CHLORO-4-[3-(TRIFLUOROMETHYL)PHENOXY]PHENYL}AMINO)-5H-PYRROLO[3,2-D]PYRIMIDIN-5-YL]ETHYL}-3-HYDROXY-3-METHYLBUTANAMIDE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:727 , VAL A:734 , ALA A:751 , LYS A:753 , SER A:783 , ARG A:784 , LEU A:785 , LEU A:796 , THR A:798 , GLN A:799 , LEU A:800 , MET A:801 , GLY A:804 , LEU A:852 , THR A:862 , ASP A:863 , PHE A:864
BINDING SITE FOR RESIDUE 03P A 9001
2
AC2
SOFTWARE
LEU C:726 , GLY C:727 , VAL C:734 , ALA C:751 , LYS C:753 , SER C:783 , ARG C:784 , LEU C:785 , LEU C:796 , THR C:798 , GLN C:799 , LEU C:800 , MET C:801 , LEU C:852 , THR C:862 , ASP C:863 , PHE C:864
BINDING SITE FOR RESIDUE 03P C 9001
[
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SAPs(SNPs)/Variants
(5, 20)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_055432 (L755P, chain A/B/C/D, )
2: VAR_042097 (L768S, chain A/B/C/D, )
3: VAR_042098 (G776S, chain A/B/C/D, )
4: VAR_042099 (N857S, chain A/B/C/D, )
5: VAR_055435 (E914K, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_055432
L
755
P
ERBB2_HUMAN
Unclassified
---
A/B/C/D
L
755
P
2
UniProt
VAR_042097
L
768
S
ERBB2_HUMAN
Polymorphism
56366519
A/B/C/D
L
768
S
3
UniProt
VAR_042098
G
776
S
ERBB2_HUMAN
Unclassified
28933369
A/B/C/D
G
776
S
4
UniProt
VAR_042099
N
857
S
ERBB2_HUMAN
Unclassified
28933370
A/B/C/D
N
857
S
5
UniProt
VAR_055435
E
914
K
ERBB2_HUMAN
Unclassified
28933368
A/B/C/D
E
914
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:726-753,B:726-753,C:726-753,D:72...)
2: PROTEIN_KINASE_TYR (A:841-853,B:841-853,C:841-853,D:84...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ERBB2_HUMAN
726-753
4
A:726-753
B:726-753
C:726-753
D:726-753
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
ERBB2_HUMAN
841-853
4
A:841-853
B:841-853
C:841-853
D:841-853
[
close PROSITE info
]
Exons
(8, 32)
Info
All Exons
Exon 1.21 (A:710-736 | B:710-736 | C:710-736 ...)
Exon 1.22 (A:737-769 (gaps) | B:737-769 (gaps...)
Exon 1.23 (A:770-831 | B:770-831 | C:770-831 ...)
Exon 1.24 (A:832-866 | B:832-865 | C:832-866 ...)
Exon 1.25 (A:884-909 | B:884-909 | C:884-909 ...)
Exon 1.26 (A:909-958 | B:909-958 | C:909-958 ...)
Exon 1.27 (A:958-990 | B:958-990 | C:958-990 ...)
Exon 1.28 (A:991-1022 (gaps) | B:991-1010 (ga...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.20/1.21
2: Boundary 1.21/1.22
3: Boundary 1.22/1.23
4: Boundary 1.23/1.24
5: Boundary 1.24/1.25
6: Boundary 1.25/1.26
7: Boundary 1.26/1.27
8: Boundary 1.27/1.28
9: Boundary 1.28/1.29
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000269571
4
ENSE00001234770
chr17:
37856254-37856564
311
ERBB2_HUMAN
1-25
25
0
-
-
1.5
ENST00000269571
5
ENSE00001673952
chr17:
37863243-37863394
152
ERBB2_HUMAN
25-75
51
0
-
-
1.6
ENST00000269571
6
ENSE00000950603
chr17:
37864574-37864787
214
ERBB2_HUMAN
76-147
72
0
-
-
1.7
ENST00000269571
7
ENSE00001200960
chr17:
37865571-37865705
135
ERBB2_HUMAN
147-192
46
0
-
-
1.8
ENST00000269571
8
ENSE00001200956
chr17:
37866066-37866134
69
ERBB2_HUMAN
192-215
24
0
-
-
1.9
ENST00000269571
9
ENSE00001200949
chr17:
37866339-37866454
116
ERBB2_HUMAN
215-253
39
0
-
-
1.10
ENST00000269571
10
ENSE00000950607
chr17:
37866593-37866734
142
ERBB2_HUMAN
254-301
48
0
-
-
1.11
ENST00000269571
11
ENSE00001200943
chr17:
37868181-37868300
120
ERBB2_HUMAN
301-341
41
0
-
-
1.12
ENST00000269571
12
ENSE00001200937
chr17:
37868575-37868701
127
ERBB2_HUMAN
341-383
43
0
-
-
1.13
ENST00000269571
13
ENSE00001121108
chr17:
37871539-37871612
74
ERBB2_HUMAN
383-408
26
0
-
-
1.14
ENST00000269571
14
ENSE00001121103
chr17:
37871699-37871789
91
ERBB2_HUMAN
408-438
31
0
-
-
1.15
ENST00000269571
15
ENSE00001121098
chr17:
37871993-37872192
200
ERBB2_HUMAN
438-505
68
0
-
-
1.16
ENST00000269571
16
ENSE00001121093
chr17:
37872554-37872686
133
ERBB2_HUMAN
505-549
45
0
-
-
1.17
ENST00000269571
17
ENSE00001121088
chr17:
37872768-37872858
91
ERBB2_HUMAN
549-579
31
0
-
-
1.18
ENST00000269571
18
ENSE00000950615
chr17:
37873573-37873733
161
ERBB2_HUMAN
580-633
54
0
-
-
1.19
ENST00000269571
19
ENSE00001121079
chr17:
37876040-37876087
48
ERBB2_HUMAN
633-649
17
0
-
-
1.20
ENST00000269571
20
ENSE00001121070
chr17:
37879572-37879710
139
ERBB2_HUMAN
649-695
47
0
-
-
1.21
ENST00000269571
21
ENSE00000950618
chr17:
37879791-37879913
123
ERBB2_HUMAN
696-736
41
4
A:710-736
B:710-736
C:710-736
D:710-736
27
27
27
27
1.22
ENST00000269571
22
ENSE00000950619
chr17:
37880165-37880263
99
ERBB2_HUMAN
737-769
33
4
A:737-769 (gaps)
B:737-769 (gaps)
C:737-769 (gaps)
D:737-769 (gaps)
33
33
33
33
1.23
ENST00000269571
23
ENSE00000950620
chr17:
37880979-37881164
186
ERBB2_HUMAN
770-831
62
4
A:770-831
B:770-831
C:770-831
D:770-831
62
62
62
62
1.24
ENST00000269571
24
ENSE00000950621
chr17:
37881302-37881457
156
ERBB2_HUMAN
832-883
52
4
A:832-866
B:832-865
C:832-866
D:832-865
35
34
35
34
1.25
ENST00000269571
25
ENSE00001717073
chr17:
37881580-37881655
76
ERBB2_HUMAN
884-909
26
4
A:884-909
B:884-909
C:884-909
D:884-909
26
26
26
26
1.26
ENST00000269571
26
ENSE00000950623
chr17:
37881960-37882106
147
ERBB2_HUMAN
909-958
50
4
A:909-958
B:909-958
C:909-958
D:909-958
50
50
50
50
1.27
ENST00000269571
27
ENSE00000950624
chr17:
37882815-37882912
98
ERBB2_HUMAN
958-990
33
4
A:958-990
B:958-990
C:958-990
D:958-990
33
33
33
33
1.28
ENST00000269571
28
ENSE00000950625
chr17:
37883068-37883256
189
ERBB2_HUMAN
991-1053
63
4
A:991-1022 (gaps)
B:991-1010 (gaps)
C:991-1022 (gaps)
D:991-1010 (gaps)
32
20
32
20
1.29
ENST00000269571
29
ENSE00000950626
chr17:
37883548-37883800
253
ERBB2_HUMAN
1054-1138
85
0
-
-
1.30
ENST00000269571
30
ENSE00001384235
chr17:
37883942-37884915
974
ERBB2_HUMAN
1138-1255
118
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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