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3RCC
Biol. Unit 2
Info
Asym.Unit (375 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (125 KB)
Biol.Unit 3 (127 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE STREPTOCOCCUS AGALACTIAE SORTASE A
Authors
:
B. Khare, S. V. L. Narayana
Date
:
30 Mar 11 (Deposition) - 07 Sep 11 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Biol. Unit 3: M,N,O,P,Q,R (1x)
Keywords
:
Sortase Fold, Beta-Barrel, Housekeeping Sortase, Surface Protein Anchoring, Pili Anchoring, Pili Biogenesis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Khare, V. Krishnan, K. R. Rajashankar, H. I-Hsiu, M. Xin, H. Ton-That, S. V. Narayana
Structural Differences Between The Streptococcus Agalactiae Housekeeping And Pilus-Specific Sortases: Srta And Srtc1.
Plos One V. 6 22995 2011
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close entry info
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1aa: ZINC ION (ZNaa)
1ab: ZINC ION (ZNab)
1ac: ZINC ION (ZNac)
1ad: ZINC ION (ZNad)
1ae: ZINC ION (ZNae)
1af: ZINC ION (ZNaf)
1ag: ZINC ION (ZNag)
1ah: ZINC ION (ZNah)
1ai: ZINC ION (ZNai)
1aj: ZINC ION (ZNaj)
1ak: ZINC ION (ZNak)
1al: ZINC ION (ZNal)
1am: ZINC ION (ZNam)
1an: ZINC ION (ZNan)
1ao: ZINC ION (ZNao)
1ap: ZINC ION (ZNap)
1aq: ZINC ION (ZNaq)
1ar: ZINC ION (ZNar)
1as: ZINC ION (ZNas)
1at: ZINC ION (ZNat)
1au: ZINC ION (ZNau)
1av: ZINC ION (ZNav)
1aw: ZINC ION (ZNaw)
1ax: ZINC ION (ZNax)
1ay: ZINC ION (ZNay)
1az: ZINC ION (ZNaz)
1b: ZINC ION (ZNb)
1ba: ZINC ION (ZNba)
1bb: ZINC ION (ZNbb)
1bc: ZINC ION (ZNbc)
1bd: ZINC ION (ZNbd)
1be: ZINC ION (ZNbe)
1bf: ZINC ION (ZNbf)
1bg: ZINC ION (ZNbg)
1bh: ZINC ION (ZNbh)
1bi: ZINC ION (ZNbi)
1bj: ZINC ION (ZNbj)
1bk: ZINC ION (ZNbk)
1bl: ZINC ION (ZNbl)
1bm: ZINC ION (ZNbm)
1bn: ZINC ION (ZNbn)
1bo: ZINC ION (ZNbo)
1bp: ZINC ION (ZNbp)
1bq: ZINC ION (ZNbq)
1br: ZINC ION (ZNbr)
1bs: ZINC ION (ZNbs)
1bt: ZINC ION (ZNbt)
1bu: ZINC ION (ZNbu)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
1x: ZINC ION (ZNx)
1y: ZINC ION (ZNy)
1z: ZINC ION (ZNz)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(36, 36)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC5 (SOFTWARE)
20: DC6 (SOFTWARE)
21: DC7 (SOFTWARE)
22: DC8 (SOFTWARE)
23: DC9 (SOFTWARE)
24: EC1 (SOFTWARE)
25: EC2 (SOFTWARE)
26: EC3 (SOFTWARE)
27: EC4 (SOFTWARE)
28: EC5 (SOFTWARE)
29: EC6 (SOFTWARE)
30: EC7 (SOFTWARE)
31: EC8 (SOFTWARE)
32: EC9 (SOFTWARE)
33: FC1 (SOFTWARE)
34: FC2 (SOFTWARE)
35: FC3 (SOFTWARE)
36: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
GLU A:168 , HIS A:196 , GLU L:158 , HOH L:401
BINDING SITE FOR RESIDUE ZN A 303
02
AC4
SOFTWARE
GLU A:135 , GLU A:191 , GLU L:165
BINDING SITE FOR RESIDUE ZN A 304
03
AC5
SOFTWARE
GLU A:165 , GLU L:135
BINDING SITE FOR RESIDUE ZN A 305
04
AC8
SOFTWARE
GLU B:168 , HIS B:196 , GLU K:158 , HOH K:401
BINDING SITE FOR RESIDUE ZN B 303
05
AC9
SOFTWARE
GLU B:135 , GLU K:165
BINDING SITE FOR RESIDUE ZN B 304
06
BC2
SOFTWARE
GLU B:165 , GLU K:135
BINDING SITE FOR RESIDUE ZN B 306
07
BC5
SOFTWARE
GLU C:168 , HIS C:196 , GLU J:158 , HOH J:402
BINDING SITE FOR RESIDUE ZN C 303
08
BC6
SOFTWARE
GLU C:135 , GLU J:165
BINDING SITE FOR RESIDUE ZN C 304
09
BC7
SOFTWARE
GLU C:165 , GLU J:135
BINDING SITE FOR RESIDUE ZN C 305
10
CC1
SOFTWARE
GLU D:168 , HIS D:196 , GLU I:158 , HOH I:405
BINDING SITE FOR RESIDUE ZN D 303
11
CC2
SOFTWARE
GLU D:165 , GLU I:135
BINDING SITE FOR RESIDUE ZN D 304
12
CC5
SOFTWARE
GLU E:168 , HIS E:196 , GLU H:158 , HOH H:401
BINDING SITE FOR RESIDUE ZN E 303
13
CC6
SOFTWARE
GLU E:135 , GLU H:165
BINDING SITE FOR RESIDUE ZN E 304
14
CC9
SOFTWARE
GLU F:168 , HIS F:196 , HOH F:405 , GLU G:158
BINDING SITE FOR RESIDUE ZN G 301
15
DC1
SOFTWARE
GLU F:135 , GLU G:165
BINDING SITE FOR RESIDUE ZN G 302
16
DC2
SOFTWARE
HIS G:66 , ASN G:67 , GLU G:93 , GLU H:80
BINDING SITE FOR RESIDUE ZN G 303
17
DC3
SOFTWARE
HIS G:118 , HOH G:401 , HOH G:402 , HIS H:136
BINDING SITE FOR RESIDUE ZN G 304
18
DC4
SOFTWARE
GLU F:158 , HOH F:401 , GLU G:168 , HIS G:196
BINDING SITE FOR RESIDUE ZN G 305
19
DC5
SOFTWARE
GLU F:165 , GLU G:135 , GLU G:191
BINDING SITE FOR RESIDUE ZN G 306
20
DC6
SOFTWARE
HIS G:136 , HIS L:118 , HOH L:403 , HOH L:404
BINDING SITE FOR RESIDUE ZN G 307
21
DC7
SOFTWARE
HIS H:66 , GLU H:93 , GLU I:80
BINDING SITE FOR RESIDUE ZN H 301
22
DC8
SOFTWARE
HIS H:118 , HIS I:136 , HOH I:401 , HOH I:402
BINDING SITE FOR RESIDUE ZN H 302
23
DC9
SOFTWARE
GLU E:158 , HOH E:401 , GLU H:168 , HIS H:196
BINDING SITE FOR RESIDUE ZN H 303
24
EC1
SOFTWARE
GLU E:165 , GLU H:135 , GLU H:191
BINDING SITE FOR RESIDUE ZN H 304
25
EC2
SOFTWARE
GLU D:135 , GLU I:165
BINDING SITE FOR RESIDUE ZN I 301
26
EC3
SOFTWARE
HIS I:66 , ASN I:67 , GLU I:93 , GLU J:80
BINDING SITE FOR RESIDUE ZN I 302
27
EC4
SOFTWARE
HIS I:118 , HOH I:403 , HIS J:136 , HOH J:401
BINDING SITE FOR RESIDUE ZN I 303
28
EC5
SOFTWARE
GLU D:158 , GLU I:168 , HIS I:196 , HOH I:404
BINDING SITE FOR RESIDUE ZN I 304
29
EC6
SOFTWARE
HIS J:66 , ASN J:67 , GLU J:93 , GLU K:80
BINDING SITE FOR RESIDUE ZN J 301
30
EC7
SOFTWARE
HIS J:118 , HIS K:136 , HOH K:402 , HOH K:403
BINDING SITE FOR RESIDUE ZN J 302
31
EC8
SOFTWARE
GLU C:158 , HOH C:403 , GLU J:168 , HIS J:196
BINDING SITE FOR RESIDUE ZN J 303
32
EC9
SOFTWARE
HIS K:66 , ASN K:67 , GLU K:93 , GLU L:80
BINDING SITE FOR RESIDUE ZN K 301
33
FC1
SOFTWARE
HIS K:118 , HOH K:404 , HIS L:136 , HOH L:402
BINDING SITE FOR RESIDUE ZN K 302
34
FC2
SOFTWARE
GLU B:158 , GLU K:168 , HIS K:196 , HOH K:405
BINDING SITE FOR RESIDUE ZN K 303
35
FC3
SOFTWARE
GLU G:80 , HIS L:66 , GLU L:93
BINDING SITE FOR RESIDUE ZN L 301
36
FC4
SOFTWARE
GLU A:158 , GLU L:168 , HIS L:196
BINDING SITE FOR RESIDUE ZN L 302
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain L
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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