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Getting 'Biological Unit' information from database.
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3RC0
Biol. Unit 1
Info
Asym.Unit (152 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
HUMAN SETD6 IN COMPLEX WITH RELA LYS310 PEPTIDE
Authors
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Date
:
30 Mar 11 (Deposition) - 25 May 11 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Keywords
:
Epigenetics, Protein Lysine Monomethylation, Mammalian Nuclear Factor Kb (Nf-Kb), Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Structural Basis Of Setd6-Mediated Regulation Of The Nf-Kb Network Via Methyl-Lysine Signaling.
Nucleic Acids Res. V. 39 6380 2011
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: S-ADENOSYLMETHIONINE (SAMa)
2b: S-ADENOSYLMETHIONINE (SAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
2
SAM
1
Ligand/Ion
S-ADENOSYLMETHIONINE
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:150 , GLY A:151 , ARG A:152 , LEU A:153 , PHE A:158 , GLN A:215
BINDING SITE FOR RESIDUE EDO A 474
02
AC2
SOFTWARE
SER A:120 , TRP A:122 , ASN A:183 , GLU A:187
BINDING SITE FOR RESIDUE EDO A 475
03
AC3
SOFTWARE
ARG A:31 , LEU A:424 , TYR A:427 , ALA A:428 , HOH A:521
BINDING SITE FOR RESIDUE EDO A 476
04
AC4
SOFTWARE
GLU A:396 , GLU A:397 , GLY A:398 , SER A:399 , PRO B:136
BINDING SITE FOR RESIDUE EDO A 477
05
AC5
SOFTWARE
VAL A:300 , TYR A:444 , TRP A:449 , GLN A:452 , HOH A:590 , LYS B:441
BINDING SITE FOR RESIDUE EDO A 478
06
AC6
SOFTWARE
ARG A:30 , LEU A:34 , LEU A:36 , HOH A:651
BINDING SITE FOR RESIDUE EDO A 479
07
AC7
SOFTWARE
HOH A:49 , LEU A:253 , VAL A:300 , SAM A:484 , HOH A:590 , HOH A:595 , LYS B:441
BINDING SITE FOR RESIDUE EDO A 480
08
AC8
SOFTWARE
ASN A:440 , GLU A:442 , GLY B:74 , EDO B:477
BINDING SITE FOR RESIDUE EDO A 481
09
AC9
SOFTWARE
LEU A:362 , GLU A:364 , GLU A:365 , GLU A:366 , HOH A:628 , HOH A:701
BINDING SITE FOR RESIDUE EDO A 482
10
BC1
SOFTWARE
GLN A:324 , ASN A:418 , LEU A:422 , GLN A:425 , HOH A:563 , HOH A:576
BINDING SITE FOR RESIDUE EDO A 483
11
BC2
SOFTWARE
VAL A:72 , ALA A:73 , GLY A:74 , TYR A:75 , ALA A:222 , TYR A:223 , ASP A:248 , ILE A:249 , LEU A:250 , ASN A:251 , HIS A:252 , TYR A:285 , TYR A:297 , PHE A:299 , EDO A:480 , HOH A:523 , HOH A:551 , HOH A:560 , HOH A:578 , HOH A:596 , HOH A:619
BINDING SITE FOR RESIDUE SAM A 484
12
BC5
SOFTWARE
GLU A:197 , ARG A:208 , ASN B:255 , HOH B:649
BINDING SITE FOR RESIDUE EDO B 476
13
BC6
SOFTWARE
ASN A:440 , LYS A:441 , GLU A:442 , EDO A:481 , VAL B:72 , ALA B:73 , TRP B:449 , SAM B:480 , HOH B:528 , HOH B:582
BINDING SITE FOR RESIDUE EDO B 477
[
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_064590 (R185S, chain A, )
2: VAR_064591 (R206G, chain A, )
3: VAR_064592 (D340N, chain A, )
4: VAR_064593 (T426A, chain A, )
5: VAR_064594 (A445V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064590
R
185
S
SETD6_HUMAN
Polymorphism
17852020
A
R
185
S
2
UniProt
VAR_064591
R
206
G
SETD6_HUMAN
Polymorphism
17852021
A
R
206
G
3
UniProt
VAR_064592
D
340
N
SETD6_HUMAN
Polymorphism
11865588
A
D
340
N
4
UniProt
VAR_064593
T
426
A
SETD6_HUMAN
Polymorphism
34965375
A
T
426
A
5
UniProt
VAR_064594
A
445
V
SETD6_HUMAN
Polymorphism
36085499
A
A
445
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SET (A:64-286)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
SETD6_HUMAN
60-286
1
A:64-286
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rubis_subs_bind_3rc0B01 (B:329-465)
1b: PFAM_Rubis_subs_bind_3rc0B02 (B:329-465)
2a: PFAM_SET_3rc0B03 (B:74-286)
2b: PFAM_SET_3rc0B04 (B:74-286)
View:
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Clans
(
)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Rubis-subs-bind]
(5)
Family
:
Rubis-subs-bind
(5)
Homo sapiens (Human)
(2)
1a
Rubis-subs-bind-3rc0B01
B:329-465
1b
Rubis-subs-bind-3rc0B02
B:329-465
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3rc0B03
B:74-286
2b
SET-3rc0B04
B:74-286
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Atom Selection
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Nucleic
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Protein & NOT Variant
Protein & NOT Site
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Chain A
Chain P
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (152 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
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