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Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (74 KB)
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(1)
Title
:
HUMAN SETD6 IN COMPLEX WITH RELA LYS310 PEPTIDE
Authors
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Date
:
30 Mar 11 (Deposition) - 25 May 11 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Keywords
:
Epigenetics, Protein Lysine Monomethylation, Mammalian Nuclear Factor Kb (Nf-Kb), Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Structural Basis Of Setd6-Mediated Regulation Of The Nf-Kb Network Via Methyl-Lysine Signaling.
Nucleic Acids Res. V. 39 6380 2011
[
close entry info
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: S-ADENOSYLMETHIONINE (SAMa)
2b: S-ADENOSYLMETHIONINE (SAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
2
SAM
2
Ligand/Ion
S-ADENOSYLMETHIONINE
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:150 , GLY A:151 , ARG A:152 , LEU A:153 , PHE A:158 , GLN A:215
BINDING SITE FOR RESIDUE EDO A 474
02
AC2
SOFTWARE
SER A:120 , TRP A:122 , ASN A:183 , GLU A:187
BINDING SITE FOR RESIDUE EDO A 475
03
AC3
SOFTWARE
ARG A:31 , LEU A:424 , TYR A:427 , ALA A:428 , HOH A:521
BINDING SITE FOR RESIDUE EDO A 476
04
AC4
SOFTWARE
GLU A:396 , GLU A:397 , GLY A:398 , SER A:399 , PRO B:136
BINDING SITE FOR RESIDUE EDO A 477
05
AC5
SOFTWARE
VAL A:300 , TYR A:444 , TRP A:449 , GLN A:452 , HOH A:590 , LYS B:441
BINDING SITE FOR RESIDUE EDO A 478
06
AC6
SOFTWARE
ARG A:30 , LEU A:34 , LEU A:36 , HOH A:651
BINDING SITE FOR RESIDUE EDO A 479
07
AC7
SOFTWARE
HOH A:49 , LEU A:253 , VAL A:300 , SAM A:484 , HOH A:590 , HOH A:595 , LYS B:441
BINDING SITE FOR RESIDUE EDO A 480
08
AC8
SOFTWARE
ASN A:440 , GLU A:442 , GLY B:74 , EDO B:477
BINDING SITE FOR RESIDUE EDO A 481
09
AC9
SOFTWARE
LEU A:362 , GLU A:364 , GLU A:365 , GLU A:366 , HOH A:628 , HOH A:701
BINDING SITE FOR RESIDUE EDO A 482
10
BC1
SOFTWARE
GLN A:324 , ASN A:418 , LEU A:422 , GLN A:425 , HOH A:563 , HOH A:576
BINDING SITE FOR RESIDUE EDO A 483
11
BC2
SOFTWARE
VAL A:72 , ALA A:73 , GLY A:74 , TYR A:75 , ALA A:222 , TYR A:223 , ASP A:248 , ILE A:249 , LEU A:250 , ASN A:251 , HIS A:252 , TYR A:285 , TYR A:297 , PHE A:299 , EDO A:480 , HOH A:523 , HOH A:551 , HOH A:560 , HOH A:578 , HOH A:596 , HOH A:619
BINDING SITE FOR RESIDUE SAM A 484
12
BC3
SOFTWARE
VAL B:300 , TYR B:444 , TRP B:449 , GLN B:452 , HOH B:562 , HOH B:603
BINDING SITE FOR RESIDUE EDO B 474
13
BC4
SOFTWARE
GLY B:170 , THR B:171 , GLY B:172 , GLU B:175 , GLN B:314
BINDING SITE FOR RESIDUE EDO B 475
14
BC5
SOFTWARE
GLU A:197 , ARG A:208 , ASN B:255 , HOH B:649
BINDING SITE FOR RESIDUE EDO B 476
15
BC6
SOFTWARE
ASN A:440 , LYS A:441 , GLU A:442 , EDO A:481 , VAL B:72 , ALA B:73 , TRP B:449 , SAM B:480 , HOH B:528 , HOH B:582
BINDING SITE FOR RESIDUE EDO B 477
16
BC7
SOFTWARE
SER B:120 , ASN B:183 , GLU B:187
BINDING SITE FOR RESIDUE EDO B 478
17
BC8
SOFTWARE
GLU B:154 , TRP B:159 , TRP B:449 , ARG B:450 , GLN B:453 , HOH B:496
BINDING SITE FOR RESIDUE EDO B 479
18
BC9
SOFTWARE
VAL B:72 , ALA B:73 , GLY B:74 , TYR B:75 , ALA B:222 , TYR B:223 , ASP B:248 , ILE B:249 , LEU B:250 , ASN B:251 , HIS B:252 , TYR B:285 , TYR B:297 , PHE B:299 , EDO B:477 , HOH B:545 , HOH B:547 , HOH B:574 , HOH B:593 , HOH B:600 , HOH B:608
BINDING SITE FOR RESIDUE SAM B 480
[
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]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_064590 (R185S, chain A/B, )
2: VAR_064591 (R206G, chain A/B, )
3: VAR_064592 (D340N, chain A/B, )
4: VAR_064593 (T426A, chain A/B, )
5: VAR_064594 (A445V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064590
R
185
S
SETD6_HUMAN
Polymorphism
17852020
A/B
R
185
S
2
UniProt
VAR_064591
R
206
G
SETD6_HUMAN
Polymorphism
17852021
A/B
R
206
G
3
UniProt
VAR_064592
D
340
N
SETD6_HUMAN
Polymorphism
11865588
A/B
D
340
N
4
UniProt
VAR_064593
T
426
A
SETD6_HUMAN
Polymorphism
34965375
A/B
T
426
A
5
UniProt
VAR_064594
A
445
V
SETD6_HUMAN
Polymorphism
36085499
A/B
A
445
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SET (A:64-286,B:64-286)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
SETD6_HUMAN
60-286
2
A:64-286
B:64-286
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rubis_subs_bind_3rc0B01 (B:329-465)
1b: PFAM_Rubis_subs_bind_3rc0B02 (B:329-465)
2a: PFAM_SET_3rc0B03 (B:74-286)
2b: PFAM_SET_3rc0B04 (B:74-286)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Rubis-subs-bind]
(5)
Family
:
Rubis-subs-bind
(5)
Homo sapiens (Human)
(2)
1a
Rubis-subs-bind-3rc0B01
B:329-465
1b
Rubis-subs-bind-3rc0B02
B:329-465
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3rc0B03
B:74-286
2b
SET-3rc0B04
B:74-286
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Asymmetric Unit 1
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Asym.Unit (152 KB)
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