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3RBH
Biol. Unit 4
Info
Asym.Unit (572 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (141 KB)
Biol.Unit 4 (142 KB)
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(1)
Title
:
STRUCTURE OF ALGINATE EXPORT PROTEIN ALGE FROM PSEUDOMONAS AERUGINOSA
Authors
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. D. E. Ohman, C. E. Bear, B. H. Rehm, P. L. Howell
Date
:
29 Mar 11 (Deposition) - 27 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Barrel, Alginate Export, Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. F. Wood, D. E. Ohman, C. E. Bear, B. H. Rehm, P. Lynne Howell
Structural Basis For Alginate Secretion Across The Bacteria Outer Membrane.
Proc. Natl. Acad. Sci. Usa V. 108 13083 2011
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1aa: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eaa)
1ab: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eab)
1ac: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eac)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
1g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
1h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
1i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
1j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
1k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
1l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
1m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
1n: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8En)
1o: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eo)
1p: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ep)
1q: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eq)
1r: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Er)
1s: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Es)
1t: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Et)
1u: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eu)
1v: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ev)
1w: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ew)
1x: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ex)
1y: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ey)
1z: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ez)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C8E
11
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC9 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC8 (SOFTWARE)
04: EC4 (SOFTWARE)
05: EC5 (SOFTWARE)
06: EC7 (SOFTWARE)
07: EC8 (SOFTWARE)
08: EC9 (SOFTWARE)
09: FC1 (SOFTWARE)
10: FC2 (SOFTWARE)
11: FC3 (SOFTWARE)
12: FC4 (SOFTWARE)
13: FC5 (SOFTWARE)
14: FC6 (SOFTWARE)
15: FC7 (SOFTWARE)
16: FC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
TYR A:141 , HIS D:227 , GLN D:251
BINDING SITE FOR RESIDUE C8E A 495
02
CC2
SOFTWARE
TRP B:81 , EDO D:492
BINDING SITE FOR RESIDUE C8E B 497
03
CC8
SOFTWARE
ALA B:127 , TYR B:190 , C8E D:5
BINDING SITE FOR RESIDUE C8E B 502
04
EC4
SOFTWARE
ASP D:55 , ASP D:57 , ALA D:61 , GLY D:63 , HOH D:620 , HOH D:621
BINDING SITE FOR RESIDUE CA D 1
05
EC5
SOFTWARE
GLN D:159 , TRP D:160 , TRP D:254 , GLN D:346 , THR D:347 , HOH D:626
BINDING SITE FOR RESIDUE EDO D 7
06
EC7
SOFTWARE
PRO D:271 , GLN D:378 , ALA D:380 , TRP D:402
BINDING SITE FOR RESIDUE C8E D 493
07
EC8
SOFTWARE
THR B:192 , C8E B:502 , ASN D:41 , ALA D:77 , PHE D:78 , GLY D:79 , TRP D:81 , ALA D:86 , TYR D:87 , PHE D:148 , GLY D:149 , HOH D:601 , HOH D:643
BINDING SITE FOR RESIDUE C8E D 5
08
EC9
SOFTWARE
ILE A:48 , GLY A:50 , SER A:52 , ILE A:69 , PHE A:460 , ALA A:482 , VAL A:484 , PHE A:486 , ILE D:48 , GLY D:50 , ILE D:69 , LYS D:436 , PHE D:438 , VAL D:484 , PHE D:486 , HOH D:604
BINDING SITE FOR RESIDUE C8E D 9
09
FC1
SOFTWARE
PHE A:486 , TRP A:488 , ALA D:94 , ALA D:95 , THR D:96
BINDING SITE FOR RESIDUE C8E D 494
10
FC2
SOFTWARE
LEU D:126
BINDING SITE FOR RESIDUE C8E D 495
11
FC3
SOFTWARE
GLN A:251 , TYR D:141
BINDING SITE FOR RESIDUE C8E D 496
12
FC4
SOFTWARE
ILE D:320 , ALA D:326 , GLY D:384 , GLN D:428
BINDING SITE FOR RESIDUE C8E D 497
13
FC5
SOFTWARE
ASN D:54 , LEU D:430 , LEU D:464 , HIS D:480
BINDING SITE FOR RESIDUE C8E D 498
14
FC6
SOFTWARE
ILE A:458 , VAL D:434 , ILE D:458
BINDING SITE FOR RESIDUE C8E D 499
15
FC7
SOFTWARE
ALA D:127 , SER D:188 , TYR D:190 , ARG D:191
BINDING SITE FOR RESIDUE C8E D 500
16
FC8
SOFTWARE
ALA A:94 , VAL D:46 , PHE D:486 , TRP D:488
BINDING SITE FOR RESIDUE C8E D 501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Asymmetric Unit 1
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Example Commands
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (572 KB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 2 (147 KB)
Header - Biol.Unit 2
Biol.Unit 3 (141 KB)
Header - Biol.Unit 3
Biol.Unit 4 (142 KB)
Header - Biol.Unit 4
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