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3RBH
Biol. Unit 3
Info
Asym.Unit (572 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (141 KB)
Biol.Unit 4 (142 KB)
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(1)
Title
:
STRUCTURE OF ALGINATE EXPORT PROTEIN ALGE FROM PSEUDOMONAS AERUGINOSA
Authors
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. D. E. Ohman, C. E. Bear, B. H. Rehm, P. L. Howell
Date
:
29 Mar 11 (Deposition) - 27 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Barrel, Alginate Export, Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. F. Wood, D. E. Ohman, C. E. Bear, B. H. Rehm, P. Lynne Howell
Structural Basis For Alginate Secretion Across The Bacteria Outer Membrane.
Proc. Natl. Acad. Sci. Usa V. 108 13083 2011
[
close entry info
]
Hetero Components
(3, 17)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1aa: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eaa)
1ab: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eab)
1ac: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eac)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
1g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
1h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
1i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
1j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
1k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
1l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
1m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
1n: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8En)
1o: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eo)
1p: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ep)
1q: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eq)
1r: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Er)
1s: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Es)
1t: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Et)
1u: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eu)
1v: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ev)
1w: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ew)
1x: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ex)
1y: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ey)
1z: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ez)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C8E
6
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC6 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC5 (SOFTWARE)
05: CC6 (SOFTWARE)
06: CC9 (SOFTWARE)
07: DC1 (SOFTWARE)
08: DC2 (SOFTWARE)
09: DC3 (SOFTWARE)
10: DC4 (SOFTWARE)
11: DC5 (SOFTWARE)
12: DC6 (SOFTWARE)
13: DC7 (SOFTWARE)
14: DC8 (SOFTWARE)
15: DC9 (SOFTWARE)
16: EC1 (SOFTWARE)
17: EC2 (SOFTWARE)
18: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
TRP A:81 , TRP A:84 , PHE C:148
BINDING SITE FOR RESIDUE C8E A 494
02
BC9
SOFTWARE
VAL B:223 , HOH B:571 , ILE C:221 , GLY C:222
BINDING SITE FOR RESIDUE EDO B 495
03
CC3
SOFTWARE
ILE B:48 , GLY B:50 , ILE B:69 , LYS B:436 , ILE B:458 , VAL B:484 , PHE B:486 , ILE C:48 , GLY C:50 , LYS C:436 , PHE C:438 , VAL C:484 , PHE C:486
BINDING SITE FOR RESIDUE C8E B 8
04
CC5
SOFTWARE
TRP C:488
BINDING SITE FOR RESIDUE C8E B 499
05
CC6
SOFTWARE
TYR B:141 , HIS C:227 , GLN C:251
BINDING SITE FOR RESIDUE C8E B 500
06
CC9
SOFTWARE
ASP C:55 , ASP C:57 , ALA C:61 , GLY C:63 , HOH C:627
BINDING SITE FOR RESIDUE CA C 3
07
DC1
SOFTWARE
EDO C:5 , GLN C:159 , TRP C:254 , PHE C:344 , GLN C:346 , THR C:347 , HOH C:552
BINDING SITE FOR RESIDUE EDO C 1
08
DC2
SOFTWARE
EDO C:1 , GLN C:159 , SER C:277 , THR C:279 , GLY C:311 , VAL C:312
BINDING SITE FOR RESIDUE EDO C 5
09
DC3
SOFTWARE
GLY C:384 , SER C:385
BINDING SITE FOR RESIDUE EDO C 11
10
DC4
SOFTWARE
HOH C:528
BINDING SITE FOR RESIDUE EDO C 491
11
DC5
SOFTWARE
LEU C:314 , GLY C:315 , HOH C:570
BINDING SITE FOR RESIDUE EDO C 492
12
DC6
SOFTWARE
HIS C:218 , ARG C:220 , THR C:260 , ASP C:262
BINDING SITE FOR RESIDUE EDO C 493
13
DC7
SOFTWARE
PHE C:78 , TYR C:87 , PHE C:88 , PHE C:148 , GLY C:149 , HOH C:562
BINDING SITE FOR RESIDUE C8E C 494
14
DC8
SOFTWARE
ASN A:41 , HOH A:536 , ALA C:127 , TYR C:190 , HOH C:608
BINDING SITE FOR RESIDUE C8E C 7
15
DC9
SOFTWARE
PRO C:271 , ALA C:380
BINDING SITE FOR RESIDUE C8E C 495
16
EC1
SOFTWARE
HIS B:227 , TYR C:141 , PHE C:172
BINDING SITE FOR RESIDUE C8E C 496
17
EC2
SOFTWARE
LEU C:73 , VAL C:93 , ALA C:94 , LEU C:126
BINDING SITE FOR RESIDUE C8E C 497
18
EC3
SOFTWARE
THR B:213 , TRP B:215 , TRP C:280
BINDING SITE FOR RESIDUE C8E C 498
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (572 KB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 2 (147 KB)
Header - Biol.Unit 2
Biol.Unit 3 (141 KB)
Header - Biol.Unit 3
Biol.Unit 4 (142 KB)
Header - Biol.Unit 4
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