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3RBH
Biol. Unit 2
Info
Asym.Unit (572 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (141 KB)
Biol.Unit 4 (142 KB)
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(1)
Title
:
STRUCTURE OF ALGINATE EXPORT PROTEIN ALGE FROM PSEUDOMONAS AERUGINOSA
Authors
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. D. E. Ohman, C. E. Bear, B. H. Rehm, P. L. Howell
Date
:
29 Mar 11 (Deposition) - 27 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Barrel, Alginate Export, Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. F. Wood, D. E. Ohman, C. E. Bear, B. H. Rehm, P. Lynne Howell
Structural Basis For Alginate Secretion Across The Bacteria Outer Membrane.
Proc. Natl. Acad. Sci. Usa V. 108 13083 2011
[
close entry info
]
Hetero Components
(3, 20)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1aa: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eaa)
1ab: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eab)
1ac: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eac)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
1g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
1h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
1i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
1j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
1k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
1l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
1m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
1n: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8En)
1o: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eo)
1p: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ep)
1q: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eq)
1r: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Er)
1s: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Es)
1t: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Et)
1u: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eu)
1v: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ev)
1w: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ew)
1x: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ex)
1y: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ey)
1z: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ez)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C8E
8
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC6 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: EC1 (SOFTWARE)
18: EC3 (SOFTWARE)
19: EC6 (SOFTWARE)
20: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
ASP B:55 , ASP B:57 , ALA B:61 , GLY B:63 , HOH B:597 , HOH B:621
BINDING SITE FOR RESIDUE CA B 2
02
BC2
SOFTWARE
EDO B:6 , GLN B:159 , SER B:277 , THR B:279 , GLY B:311 , LEU B:374
BINDING SITE FOR RESIDUE EDO B 4
03
BC3
SOFTWARE
EDO B:4 , GLN B:159 , TRP B:160 , TRP B:254 , GLN B:346 , THR B:347
BINDING SITE FOR RESIDUE EDO B 6
04
BC4
SOFTWARE
TRP B:386
BINDING SITE FOR RESIDUE EDO B 9
05
BC5
SOFTWARE
ILE B:320 , C8E B:501 , HOH B:624
BINDING SITE FOR RESIDUE EDO B 491
06
BC6
SOFTWARE
VAL B:133 , PHE B:148 , HOH B:545
BINDING SITE FOR RESIDUE EDO B 492
07
BC7
SOFTWARE
TYR B:190 , HOH B:545
BINDING SITE FOR RESIDUE EDO B 493
08
BC8
SOFTWARE
TRP B:318 , HOH B:643 , HOH B:651
BINDING SITE FOR RESIDUE EDO B 494
09
BC9
SOFTWARE
VAL B:223 , HOH B:571 , ILE C:221 , GLY C:222
BINDING SITE FOR RESIDUE EDO B 495
10
CC1
SOFTWARE
TYR A:135 , GLY A:137 , TYR B:135 , HOH B:532
BINDING SITE FOR RESIDUE C8E B 496
11
CC2
SOFTWARE
TRP B:81 , EDO D:492
BINDING SITE FOR RESIDUE C8E B 497
12
CC3
SOFTWARE
ILE B:48 , GLY B:50 , ILE B:69 , LYS B:436 , ILE B:458 , VAL B:484 , PHE B:486 , ILE C:48 , GLY C:50 , LYS C:436 , PHE C:438 , VAL C:484 , PHE C:486
BINDING SITE FOR RESIDUE C8E B 8
13
CC4
SOFTWARE
TRP B:488
BINDING SITE FOR RESIDUE C8E B 498
14
CC6
SOFTWARE
TYR B:141 , HIS C:227 , GLN C:251
BINDING SITE FOR RESIDUE C8E B 500
15
CC7
SOFTWARE
ALA B:326 , PHE B:383 , GLY B:384 , EDO B:491
BINDING SITE FOR RESIDUE C8E B 501
16
CC8
SOFTWARE
ALA B:127 , TYR B:190 , C8E D:5
BINDING SITE FOR RESIDUE C8E B 502
17
EC1
SOFTWARE
HIS B:227 , TYR C:141 , PHE C:172
BINDING SITE FOR RESIDUE C8E C 496
18
EC3
SOFTWARE
THR B:213 , TRP B:215 , TRP C:280
BINDING SITE FOR RESIDUE C8E C 498
19
EC6
SOFTWARE
C8E B:497
BINDING SITE FOR RESIDUE EDO D 492
20
EC8
SOFTWARE
THR B:192 , C8E B:502 , ASN D:41 , ALA D:77 , PHE D:78 , GLY D:79 , TRP D:81 , ALA D:86 , TYR D:87 , PHE D:148 , GLY D:149 , HOH D:601 , HOH D:643
BINDING SITE FOR RESIDUE C8E D 5
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Example Commands
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Header - Biol.Unit 3
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