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3RBH
Asym. Unit
Info
Asym.Unit (572 KB)
Biol.Unit 1 (146 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (141 KB)
Biol.Unit 4 (142 KB)
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(1)
Title
:
STRUCTURE OF ALGINATE EXPORT PROTEIN ALGE FROM PSEUDOMONAS AERUGINOSA
Authors
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. D. E. Ohman, C. E. Bear, B. H. Rehm, P. L. Howell
Date
:
29 Mar 11 (Deposition) - 27 Jul 11 (Release) - 24 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Barrel, Alginate Export, Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Whitney, I. D. Hay, C. Li, P. D. Eckford, H. Robinson, M. F. Amaya, L. F. Wood, D. E. Ohman, C. E. Bear, B. H. Rehm, P. Lynne Howell
Structural Basis For Alginate Secretion Across The Bacteria Outer Membrane.
Proc. Natl. Acad. Sci. Usa V. 108 13083 2011
[
close entry info
]
Hetero Components
(4, 73)
Info
All Hetero Components
1a: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ea)
1aa: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eaa)
1ab: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eab)
1ac: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eac)
1b: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eb)
1c: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ec)
1d: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ed)
1e: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ee)
1f: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ef)
1g: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eg)
1h: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eh)
1i: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ei)
1j: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ej)
1k: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ek)
1l: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8El)
1m: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Em)
1n: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8En)
1o: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eo)
1p: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ep)
1q: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eq)
1r: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Er)
1s: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Es)
1t: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Et)
1u: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Eu)
1v: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ev)
1w: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ew)
1x: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ex)
1y: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ey)
1z: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTA... (C8Ez)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
3u: 1,2-ETHANEDIOL (EDOu)
3v: 1,2-ETHANEDIOL (EDOv)
3w: 1,2-ETHANEDIOL (EDOw)
3x: 1,2-ETHANEDIOL (EDOx)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C8E
29
Ligand/Ion
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2
CA
4
Ligand/Ion
CALCIUM ION
3
EDO
24
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(53, 53)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:55 , ASP A:57 , ALA A:61 , GLY A:63 , HOH A:563
BINDING SITE FOR RESIDUE CA A 4
02
AC2
SOFTWARE
EDO A:3 , GLN A:159 , SER A:277 , THR A:279 , GLY A:311 , VAL A:312
BINDING SITE FOR RESIDUE EDO A 2
03
AC3
SOFTWARE
EDO A:2 , GLN A:159 , TRP A:254 , GLN A:346 , THR A:347
BINDING SITE FOR RESIDUE EDO A 3
04
AC4
SOFTWARE
ILE A:320
BINDING SITE FOR RESIDUE EDO A 491
05
AC5
SOFTWARE
LEU A:255 , TRP A:280
BINDING SITE FOR RESIDUE EDO A 492
06
AC6
SOFTWARE
TRP A:81 , TRP A:84 , PHE C:148
BINDING SITE FOR RESIDUE C8E A 494
07
AC7
SOFTWARE
ALA A:380
BINDING SITE FOR RESIDUE C8E A 10
08
AC8
SOFTWARE
LEU A:314 , GLY A:315 , TYR A:330 , GLN A:378
BINDING SITE FOR RESIDUE C8E A 11
09
AC9
SOFTWARE
TYR A:141 , HIS D:227 , GLN D:251
BINDING SITE FOR RESIDUE C8E A 495
10
BC1
SOFTWARE
ASP B:55 , ASP B:57 , ALA B:61 , GLY B:63 , HOH B:597 , HOH B:621
BINDING SITE FOR RESIDUE CA B 2
11
BC2
SOFTWARE
EDO B:6 , GLN B:159 , SER B:277 , THR B:279 , GLY B:311 , LEU B:374
BINDING SITE FOR RESIDUE EDO B 4
12
BC3
SOFTWARE
EDO B:4 , GLN B:159 , TRP B:160 , TRP B:254 , GLN B:346 , THR B:347
BINDING SITE FOR RESIDUE EDO B 6
13
BC4
SOFTWARE
TRP B:386
BINDING SITE FOR RESIDUE EDO B 9
14
BC5
SOFTWARE
ILE B:320 , C8E B:501 , HOH B:624
BINDING SITE FOR RESIDUE EDO B 491
15
BC6
SOFTWARE
VAL B:133 , PHE B:148 , HOH B:545
BINDING SITE FOR RESIDUE EDO B 492
16
BC7
SOFTWARE
TYR B:190 , HOH B:545
BINDING SITE FOR RESIDUE EDO B 493
17
BC8
SOFTWARE
TRP B:318 , HOH B:643 , HOH B:651
BINDING SITE FOR RESIDUE EDO B 494
18
BC9
SOFTWARE
VAL B:223 , HOH B:571 , ILE C:221 , GLY C:222
BINDING SITE FOR RESIDUE EDO B 495
19
CC1
SOFTWARE
TYR A:135 , GLY A:137 , TYR B:135 , HOH B:532
BINDING SITE FOR RESIDUE C8E B 496
20
CC2
SOFTWARE
TRP B:81 , EDO D:492
BINDING SITE FOR RESIDUE C8E B 497
21
CC3
SOFTWARE
ILE B:48 , GLY B:50 , ILE B:69 , LYS B:436 , ILE B:458 , VAL B:484 , PHE B:486 , ILE C:48 , GLY C:50 , LYS C:436 , PHE C:438 , VAL C:484 , PHE C:486
BINDING SITE FOR RESIDUE C8E B 8
22
CC4
SOFTWARE
TRP B:488
BINDING SITE FOR RESIDUE C8E B 498
23
CC5
SOFTWARE
TRP C:488
BINDING SITE FOR RESIDUE C8E B 499
24
CC6
SOFTWARE
TYR B:141 , HIS C:227 , GLN C:251
BINDING SITE FOR RESIDUE C8E B 500
25
CC7
SOFTWARE
ALA B:326 , PHE B:383 , GLY B:384 , EDO B:491
BINDING SITE FOR RESIDUE C8E B 501
26
CC8
SOFTWARE
ALA B:127 , TYR B:190 , C8E D:5
BINDING SITE FOR RESIDUE C8E B 502
27
CC9
SOFTWARE
ASP C:55 , ASP C:57 , ALA C:61 , GLY C:63 , HOH C:627
BINDING SITE FOR RESIDUE CA C 3
28
DC1
SOFTWARE
EDO C:5 , GLN C:159 , TRP C:254 , PHE C:344 , GLN C:346 , THR C:347 , HOH C:552
BINDING SITE FOR RESIDUE EDO C 1
29
DC2
SOFTWARE
EDO C:1 , GLN C:159 , SER C:277 , THR C:279 , GLY C:311 , VAL C:312
BINDING SITE FOR RESIDUE EDO C 5
30
DC3
SOFTWARE
GLY C:384 , SER C:385
BINDING SITE FOR RESIDUE EDO C 11
31
DC4
SOFTWARE
HOH C:528
BINDING SITE FOR RESIDUE EDO C 491
32
DC5
SOFTWARE
LEU C:314 , GLY C:315 , HOH C:570
BINDING SITE FOR RESIDUE EDO C 492
33
DC6
SOFTWARE
HIS C:218 , ARG C:220 , THR C:260 , ASP C:262
BINDING SITE FOR RESIDUE EDO C 493
34
DC7
SOFTWARE
PHE C:78 , TYR C:87 , PHE C:88 , PHE C:148 , GLY C:149 , HOH C:562
BINDING SITE FOR RESIDUE C8E C 494
35
DC8
SOFTWARE
ASN A:41 , HOH A:536 , ALA C:127 , TYR C:190 , HOH C:608
BINDING SITE FOR RESIDUE C8E C 7
36
DC9
SOFTWARE
PRO C:271 , ALA C:380
BINDING SITE FOR RESIDUE C8E C 495
37
EC1
SOFTWARE
HIS B:227 , TYR C:141 , PHE C:172
BINDING SITE FOR RESIDUE C8E C 496
38
EC2
SOFTWARE
LEU C:73 , VAL C:93 , ALA C:94 , LEU C:126
BINDING SITE FOR RESIDUE C8E C 497
39
EC3
SOFTWARE
THR B:213 , TRP B:215 , TRP C:280
BINDING SITE FOR RESIDUE C8E C 498
40
EC4
SOFTWARE
ASP D:55 , ASP D:57 , ALA D:61 , GLY D:63 , HOH D:620 , HOH D:621
BINDING SITE FOR RESIDUE CA D 1
41
EC5
SOFTWARE
GLN D:159 , TRP D:160 , TRP D:254 , GLN D:346 , THR D:347 , HOH D:626
BINDING SITE FOR RESIDUE EDO D 7
42
EC6
SOFTWARE
C8E B:497
BINDING SITE FOR RESIDUE EDO D 492
43
EC7
SOFTWARE
PRO D:271 , GLN D:378 , ALA D:380 , TRP D:402
BINDING SITE FOR RESIDUE C8E D 493
44
EC8
SOFTWARE
THR B:192 , C8E B:502 , ASN D:41 , ALA D:77 , PHE D:78 , GLY D:79 , TRP D:81 , ALA D:86 , TYR D:87 , PHE D:148 , GLY D:149 , HOH D:601 , HOH D:643
BINDING SITE FOR RESIDUE C8E D 5
45
EC9
SOFTWARE
ILE A:48 , GLY A:50 , SER A:52 , ILE A:69 , PHE A:460 , ALA A:482 , VAL A:484 , PHE A:486 , ILE D:48 , GLY D:50 , ILE D:69 , LYS D:436 , PHE D:438 , VAL D:484 , PHE D:486 , HOH D:604
BINDING SITE FOR RESIDUE C8E D 9
46
FC1
SOFTWARE
PHE A:486 , TRP A:488 , ALA D:94 , ALA D:95 , THR D:96
BINDING SITE FOR RESIDUE C8E D 494
47
FC2
SOFTWARE
LEU D:126
BINDING SITE FOR RESIDUE C8E D 495
48
FC3
SOFTWARE
GLN A:251 , TYR D:141
BINDING SITE FOR RESIDUE C8E D 496
49
FC4
SOFTWARE
ILE D:320 , ALA D:326 , GLY D:384 , GLN D:428
BINDING SITE FOR RESIDUE C8E D 497
50
FC5
SOFTWARE
ASN D:54 , LEU D:430 , LEU D:464 , HIS D:480
BINDING SITE FOR RESIDUE C8E D 498
51
FC6
SOFTWARE
ILE A:458 , VAL D:434 , ILE D:458
BINDING SITE FOR RESIDUE C8E D 499
52
FC7
SOFTWARE
ALA D:127 , SER D:188 , TYR D:190 , ARG D:191
BINDING SITE FOR RESIDUE C8E D 500
53
FC8
SOFTWARE
ALA A:94 , VAL D:46 , PHE D:486 , TRP D:488
BINDING SITE FOR RESIDUE C8E D 501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (572 KB)
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Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 2 (147 KB)
Header - Biol.Unit 2
Biol.Unit 3 (141 KB)
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