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3RBF
Asym. Unit
Info
Asym.Unit (296 KB)
Biol.Unit 1 (290 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN AROMATIC L-AMINO ACID DECARBOXYLASE (AADC) IN THE APO FORM
Authors
:
G. Giardina, R. Montioli, S. Gianni, B. Cellini, A. Paiardini, C. Borri Voltattorni, F. Cutruzzola
Date
:
29 Mar 11 (Deposition) - 19 Oct 11 (Release) - 04 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Apo Enzyme, Apo Form, Open Conformation, Open Dimer, Exposed, Conformational Change, Parkinson, Aadc Deficiency, Ddc, Decarboxylase, Plp Binding, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Giardina, R. Montioli, S. Gianni, B. Cellini, A. Paiardini, C. B. Voltattorni, F. Cutruzzola
Open Conformation Of Human Dopa Decarboxylase Reveals The Mechanism Of Plp Addition To Group Ii Decarboxylases.
Proc. Natl. Acad. Sci. Usa V. 108 20514 2011
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
PLP
1
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:147 , ALA A:148 , SER A:149 , HIS A:192 , THR A:246 , ASP A:271 , ALA A:273 , ASN A:300 , HIS A:302 , LYS A:303
BINDING SITE FOR RESIDUE PLP A 481
2
AC2
SOFTWARE
LYS B:303 , TRP B:304
BINDING SITE FOR RESIDUE CL B 481
3
AC3
SOFTWARE
PRO B:282 , ARG B:285
BINDING SITE FOR RESIDUE CL B 482
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SAPs(SNPs)/Variants
(14, 28)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_014788 (V17V, chain A/B, )
02: VAR_046137 (P47H, chain A/B, )
03: VAR_019214 (E61D, chain A/B, )
04: VAR_046138 (A91V, chain A/B, )
05: VAR_046139 (S147R, chain A/B, )
06: VAR_014789 (P210L, chain A/B, )
07: VAR_014790 (M217V, chain A/B, )
08: VAR_019215 (M239I, chain A/B, )
09: VAR_019216 (M239L, chain A/B, )
10: VAR_046140 (S250F, chain A/B, )
11: VAR_046141 (A275T, chain A/B, )
12: VAR_046142 (F309L, chain A/B, )
13: VAR_046144 (L408I, chain A/B, )
14: VAR_019217 (R462Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014788
M
17
V
DDC_HUMAN
Polymorphism
6264
A/B
V
17
V
02
UniProt
VAR_046137
P
47
H
DDC_HUMAN
Disease (AADCD)
---
A/B
P
47
H
03
UniProt
VAR_019214
E
61
D
DDC_HUMAN
Polymorphism
11575292
A/B
E
61
D
04
UniProt
VAR_046138
A
91
V
DDC_HUMAN
Disease (AADCD)
---
A/B
A
91
V
05
UniProt
VAR_046139
S
147
R
DDC_HUMAN
Disease (AADCD)
---
A/B
S
147
R
06
UniProt
VAR_014789
P
210
L
DDC_HUMAN
Polymorphism
6262
A/B
P
210
L
07
UniProt
VAR_014790
M
217
V
DDC_HUMAN
Polymorphism
6263
A/B
M
217
V
08
UniProt
VAR_019215
M
239
I
DDC_HUMAN
Polymorphism
11575377
A/B
M
239
I
09
UniProt
VAR_019216
M
239
L
DDC_HUMAN
Polymorphism
11575376
A/B
M
239
L
10
UniProt
VAR_046140
S
250
F
DDC_HUMAN
Disease (AADCD)
---
A/B
S
250
F
11
UniProt
VAR_046141
A
275
T
DDC_HUMAN
Disease (AADCD)
---
A/B
A
275
T
12
UniProt
VAR_046142
F
309
L
DDC_HUMAN
Disease (AADCD)
---
A/B
F
309
L
13
UniProt
VAR_046144
L
408
I
DDC_HUMAN
Disease (AADCD)
---
A/B
L
408
I
14
UniProt
VAR_019217
R
462
Q
DDC_HUMAN
Polymorphism
11575542
A/B
R
462
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DDC_GAD_HDC_YDC (A:296-317,B:296-317)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DDC_GAD_HDC_YDC
PS00392
DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
DDC_HUMAN
296-317
2
A:296-317
B:296-317
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3rbfa_ (A:)
1b: SCOP_d3rbfb_ (B:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Pyridoxal-dependent decarboxylase
(14)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3rbfa_
A:
1b
d3rbfb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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