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3RBB
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
HIV-1 NEF PROTEIN IN COMPLEX WITH ENGINEERED HCK SH3 DOMAIN
Authors
:
F. A. Horenkamp, A. Schulte, M. Weyand, M. Geyer
Date
:
29 Mar 11 (Deposition) - 27 Apr 11 (Release) - 29 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hiv-1 Nef, Dileucine Motif, Sh3 Domain, Receptor Internalization, Pxxp Motif, Protein Binding, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. A. Horenkamp, S. Breuer, A. Schulte, S. Lulf, M. Weyand, K. Saksela, M. Geyer
Conformation Of The Dileucine-Based Sorting Motif In Hiv-1 Nef Revealed By Intermolecular Domain Assembly.
Traffic V. 12 867 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:180 , VAL A:184 , ARG C:110
BINDING SITE FOR RESIDUE EDO C 1
2
AC2
SOFTWARE
HOH A:31 , HOH A:36 , TRP A:106 , ARG A:138 , LEU A:149
BINDING SITE FOR RESIDUE EDO A 2
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041708 (M105L, chain B/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041708
M
105
L
HCK_HUMAN
Polymorphism
55722810
B/D
M
105
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(2, 4)
Info
All Exons
Exon 1.6a (B:79-110 | D:80-110)
Exon 1.7 (B:110-138 | D:110-137)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6a
2: Boundary 1.6a/1.7
3: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000375852
1c
ENSE00002183369
chr20:
30640064-30640289
226
HCK_HUMAN
1-21
21
0
-
-
1.4a
ENST00000375852
4a
ENSE00001592701
chr20:
30659465-30659585
121
HCK_HUMAN
21-61
41
0
-
-
1.5
ENST00000375852
5
ENSE00000661152
chr20:
30661122-30661164
43
HCK_HUMAN
62-76
15
0
-
-
1.6a
ENST00000375852
6a
ENSE00000661153
chr20:
30661519-30661621
103
HCK_HUMAN
76-110
35
2
B:79-110
D:80-110
32
31
1.7
ENST00000375852
7
ENSE00000661154
chr20:
30662426-30662524
99
HCK_HUMAN
110-143
34
2
B:110-138
D:110-137
29
28
1.8
ENST00000375852
8
ENSE00000661155
chr20:
30667577-30667680
104
HCK_HUMAN
143-178
36
0
-
-
1.9
ENST00000375852
9
ENSE00000661156
chr20:
30671697-30671846
150
HCK_HUMAN
178-228
51
0
-
-
1.10
ENST00000375852
10
ENSE00000661157
chr20:
30672194-30672346
153
HCK_HUMAN
228-279
52
0
-
-
1.11
ENST00000375852
11
ENSE00000661158
chr20:
30674431-30674610
180
HCK_HUMAN
279-339
61
0
-
-
1.12
ENST00000375852
12
ENSE00000661159
chr20:
30676371-30676447
77
HCK_HUMAN
339-364
26
0
-
-
1.13
ENST00000375852
13
ENSE00001612642
chr20:
30681666-30681819
154
HCK_HUMAN
365-416
52
0
-
-
1.14
ENST00000375852
14
ENSE00001636203
chr20:
30686807-30686938
132
HCK_HUMAN
416-460
45
0
-
-
1.15d
ENST00000375852
15d
ENSE00001468583
chr20:
30689120-30689659
540
HCK_HUMAN
460-526
67
0
-
-
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3rbbb_ (B:)
1b: SCOP_d3rbbd_ (D:)
2a: SCOP_d3rbba_ (A:)
2b: SCOP_d3rbbc_ (C:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d3rbbb_
B:
1b
d3rbbd_
D:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Regulatory factor Nef
(10)
Superfamily
:
Regulatory factor Nef
(10)
Family
:
Regulatory factor Nef
(8)
Protein domain
:
automated matches
(4)
Hiv-1 m:b_arv2/sf2 [TaxId: 11685]
(3)
2a
d3rbba_
A:
2b
d3rbbc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SH3_1_3rbbD01 (D:84-130)
1b: PFAM_SH3_1_3rbbD02 (D:84-130)
2a: PFAM_F_protein_3rbbC01 (C:69-208)
2b: PFAM_F_protein_3rbbC02 (C:69-208)
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)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-3rbbD01
D:84-130
1b
SH3_1-3rbbD02
D:84-130
Clan
:
no clan defined [family: F-protein]
(7)
Family
:
F-protein
(7)
Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) (HIV-1)
(3)
2a
F-protein-3rbbC01
C:69-208
2b
F-protein-3rbbC02
C:69-208
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Show PDB file:
Asym.Unit (143 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
Header - Biol.Unit 2
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