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3RAB
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
GPPNHP-BOUND RAB3A AT 2.0 A RESOLUTION
Authors
:
J. J. Dumas, Z. Zhu, J. L. Connolly, D. G. Lambright
Date
:
16 Nov 98 (Deposition) - 16 Apr 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
G Protein, Vesicular Trafficking, Gtp Hydrolysis, Rab Protein, Neurotransmitter Release, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Dumas, Z. Zhu, J. L. Connolly, D. G. Lambright
Structural Basis Of Activation And Gtp Hydrolysis In Rab Proteins.
Structure Fold. Des. V. 7 413 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:36 , THR A:54 , GNP A:200 , HOH A:301 , HOH A:318
BINDING SITE FOR RESIDUE MG A 201
2
AC2
SOFTWARE
SER A:31 , SER A:32 , VAL A:33 , GLY A:34 , LYS A:35 , THR A:36 , SER A:37 , PHE A:47 , THR A:48 , PRO A:49 , ALA A:50 , PHE A:51 , SER A:53 , THR A:54 , GLY A:80 , ASN A:135 , LYS A:136 , ASP A:138 , MET A:139 , SER A:165 , ALA A:166 , LYS A:167 , MG A:201 , HOH A:302 , HOH A:318 , HOH A:566
BINDING SITE FOR RESIDUE GNP A 200
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAB (A:18-186)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAB
PS51419
small GTPase Rab1 family profile.
RAB3A_RAT
18-220
1
A:18-186
[
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Exons
(4, 4)
Info
All Exons
Exon 1.2b (A:18-76)
Exon 1.5 (A:77-116)
Exon 1.6 (A:116-158)
Exon 1.8 (A:158-186)
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.8
5: Boundary 1.8/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000026391
1
ENSRNOE00000426276
chr16:
19193874-19193767
108
RAB3A_RAT
-
0
0
-
-
1.2b
ENSRNOT00000026391
2b
ENSRNOE00000188693
chr16:
19192725-19192498
228
RAB3A_RAT
1-76
76
1
A:18-76
59
1.5
ENSRNOT00000026391
5
ENSRNOE00000291604
chr16:
19192016-19191898
119
RAB3A_RAT
77-116
40
1
A:77-116
40
1.6
ENSRNOT00000026391
6
ENSRNOE00000188854
chr16:
19191277-19191153
125
RAB3A_RAT
116-158
43
1
A:116-158
43
1.8
ENSRNOT00000026391
8
ENSRNOE00000238253
chr16:
19190563-19189768
796
RAB3A_RAT
158-220
63
1
A:158-186
29
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3raba_ (A:)
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Classes
(
)
(
)
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)
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rab3a
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d3raba_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3rabA00 (A:18-186)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Norway rat (Rattus norvegicus)
(38)
1a
3rabA00
A:18-186
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ras_3rabA01 (A:24-185)
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Clans
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)
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(
)
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Rattus norvegicus (Rat)
(6)
1a
Ras-3rabA01
A:24-185
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Asymmetric Unit 1
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