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3R7K
Asym. Unit
Info
Asym.Unit (480 KB)
Biol.Unit 1 (469 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PROBABLE ACYL COA DEHYDROGENASE FROM MYCOBACTERIUM ABSCESSUS ATCC 19977 / DSM 44196
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
22 Mar 11 (Deposition) - 13 Apr 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAa)
1b: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAb)
1c: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAc)
1d: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAd)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FDA
4
Ligand/Ion
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2
K
6
Ligand/Ion
POTASSIUM ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:114 , LEU A:144 , VAL A:146 , THR A:147 , GLY A:152 , SER A:153 , PHE A:177 , ILE A:178 , THR A:179 , ILE A:378 , ILE A:381 , THR A:385 , GLU A:387 , GLU A:391 , HOH A:415 , ARG B:288 , THR B:290 , PHE B:291 , LEU B:295 , ARG B:298 , ILE B:300 , GLN B:356 , ILE B:357 , GLY B:360 , GLN C:299
BINDING SITE FOR RESIDUE FDA A 420
02
AC2
SOFTWARE
THR A:93
BINDING SITE FOR RESIDUE K A 400
03
AC3
SOFTWARE
TYR A:373 , HOH A:416 , TYR B:373 , HOH B:408
BINDING SITE FOR RESIDUE K A 401
04
AC4
SOFTWARE
ARG A:288 , THR A:290 , PHE A:291 , LEU A:295 , ARG A:298 , ILE A:301 , GLN A:356 , ILE A:357 , GLY A:359 , GLY A:360 , LEU B:144 , VAL B:146 , THR B:147 , GLY B:152 , SER B:153 , PHE B:177 , ILE B:178 , THR B:179 , LYS B:221 , ILE B:381 , THR B:385 , GLU B:387 , GLN D:299
BINDING SITE FOR RESIDUE FDA B 420
05
AC5
SOFTWARE
SER B:89 , THR B:93
BINDING SITE FOR RESIDUE K B 400
06
AC6
SOFTWARE
GLN A:299 , ILE C:114 , LEU C:144 , VAL C:146 , THR C:147 , GLY C:152 , SER C:153 , PHE C:177 , ILE C:178 , THR C:179 , ILE C:378 , ILE C:381 , THR C:385 , GLU C:387 , ARG D:288 , THR D:290 , LEU D:295 , ILE D:301 , GLN D:356 , ILE D:357 , GLY D:360
BINDING SITE FOR RESIDUE FDA C 420
07
AC7
SOFTWARE
SER C:89 , THR C:93
BINDING SITE FOR RESIDUE K C 400
08
AC8
SOFTWARE
TYR C:373 , HOH C:412 , HOH C:413 , HOH C:414 , TYR D:373 , HOH D:412
BINDING SITE FOR RESIDUE K C 401
09
AC9
SOFTWARE
GLN B:299 , ARG C:288 , THR C:290 , PHE C:291 , LEU C:295 , ARG C:298 , ILE C:301 , GLN C:356 , ILE C:357 , GLY C:360 , LEU D:144 , VAL D:146 , THR D:147 , GLY D:152 , SER D:153 , PHE D:177 , ILE D:178 , THR D:179 , LYS D:221 , ILE D:381 , THR D:385 , GLU D:387
BINDING SITE FOR RESIDUE FDA D 420
10
BC1
SOFTWARE
THR D:93
BINDING SITE FOR RESIDUE K D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3r7ka2 (A:249-398)
1b: SCOP_d3r7kb2 (B:249-398)
1c: SCOP_d3r7kc2 (C:249-399)
1d: SCOP_d3r7kd2 (D:249-398)
2a: SCOP_d3r7ka1 (A:21-248)
2b: SCOP_d3r7kb1 (B:21-248)
2c: SCOP_d3r7kc1 (C:23-248)
2d: SCOP_d3r7kd1 (D:23-248)
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Mycobacterium abscessus [TaxId: 561007]
(2)
1a
d3r7ka2
A:249-398
1b
d3r7kb2
B:249-398
1c
d3r7kc2
C:249-399
1d
d3r7kd2
D:249-398
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Mycobacterium abscessus [TaxId: 561007]
(2)
2a
d3r7ka1
A:21-248
2b
d3r7kb1
B:21-248
2c
d3r7kc1
C:23-248
2d
d3r7kd1
D:23-248
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Acyl_CoA_dh_1_3r7kD01 (D:249-398)
1b: PFAM_Acyl_CoA_dh_1_3r7kD02 (D:249-398)
1c: PFAM_Acyl_CoA_dh_1_3r7kD03 (D:249-398)
1d: PFAM_Acyl_CoA_dh_1_3r7kD04 (D:249-398)
2a: PFAM_Acyl_CoA_dh_M_3r7kD05 (D:143-195)
2b: PFAM_Acyl_CoA_dh_M_3r7kD06 (D:143-195)
2c: PFAM_Acyl_CoA_dh_M_3r7kD07 (D:143-195)
2d: PFAM_Acyl_CoA_dh_M_3r7kD08 (D:143-195)
3a: PFAM_Acyl_CoA_dh_N_3r7kD09 (D:26-139)
3b: PFAM_Acyl_CoA_dh_N_3r7kD10 (D:26-139)
3c: PFAM_Acyl_CoA_dh_N_3r7kD11 (D:26-139)
3d: PFAM_Acyl_CoA_dh_N_3r7kD12 (D:26-139)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
Acyl-CoA_dh_1
(24)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(1)
1a
Acyl-CoA_dh_1-3r7kD01
D:249-398
1b
Acyl-CoA_dh_1-3r7kD02
D:249-398
1c
Acyl-CoA_dh_1-3r7kD03
D:249-398
1d
Acyl-CoA_dh_1-3r7kD04
D:249-398
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(1)
2a
Acyl-CoA_dh_M-3r7kD05
D:143-195
2b
Acyl-CoA_dh_M-3r7kD06
D:143-195
2c
Acyl-CoA_dh_M-3r7kD07
D:143-195
2d
Acyl-CoA_dh_M-3r7kD08
D:143-195
Clan
:
no clan defined [family: Acyl-CoA_dh_N]
(23)
Family
:
Acyl-CoA_dh_N
(23)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(1)
3a
Acyl-CoA_dh_N-3r7kD09
D:26-139
3b
Acyl-CoA_dh_N-3r7kD10
D:26-139
3c
Acyl-CoA_dh_N-3r7kD11
D:26-139
3d
Acyl-CoA_dh_N-3r7kD12
D:26-139
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