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3R7K
Biol. Unit 1
Info
Asym.Unit (480 KB)
Biol.Unit 1 (469 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PROBABLE ACYL COA DEHYDROGENASE FROM MYCOBACTERIUM ABSCESSUS ATCC 19977 / DSM 44196
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
22 Mar 11 (Deposition) - 13 Apr 11 (Release) - 22 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAa)
1b: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAb)
1c: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAc)
1d: DIHYDROFLAVINE-ADENINE DINUCLEOTID... (FDAd)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FDA
4
Ligand/Ion
DIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2
K
-1
Ligand/Ion
POTASSIUM ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:114 , LEU A:144 , VAL A:146 , THR A:147 , GLY A:152 , SER A:153 , PHE A:177 , ILE A:178 , THR A:179 , ILE A:378 , ILE A:381 , THR A:385 , GLU A:387 , GLU A:391 , HOH A:415 , ARG B:288 , THR B:290 , PHE B:291 , LEU B:295 , ARG B:298 , ILE B:300 , GLN B:356 , ILE B:357 , GLY B:360 , GLN C:299
BINDING SITE FOR RESIDUE FDA A 420
02
AC2
SOFTWARE
THR A:93
BINDING SITE FOR RESIDUE K A 400
03
AC3
SOFTWARE
TYR A:373 , HOH A:416 , TYR B:373 , HOH B:408
BINDING SITE FOR RESIDUE K A 401
04
AC4
SOFTWARE
ARG A:288 , THR A:290 , PHE A:291 , LEU A:295 , ARG A:298 , ILE A:301 , GLN A:356 , ILE A:357 , GLY A:359 , GLY A:360 , LEU B:144 , VAL B:146 , THR B:147 , GLY B:152 , SER B:153 , PHE B:177 , ILE B:178 , THR B:179 , LYS B:221 , ILE B:381 , THR B:385 , GLU B:387 , GLN D:299
BINDING SITE FOR RESIDUE FDA B 420
05
AC5
SOFTWARE
SER B:89 , THR B:93
BINDING SITE FOR RESIDUE K B 400
06
AC6
SOFTWARE
GLN A:299 , ILE C:114 , LEU C:144 , VAL C:146 , THR C:147 , GLY C:152 , SER C:153 , PHE C:177 , ILE C:178 , THR C:179 , ILE C:378 , ILE C:381 , THR C:385 , GLU C:387 , ARG D:288 , THR D:290 , LEU D:295 , ILE D:301 , GLN D:356 , ILE D:357 , GLY D:360
BINDING SITE FOR RESIDUE FDA C 420
07
AC7
SOFTWARE
SER C:89 , THR C:93
BINDING SITE FOR RESIDUE K C 400
08
AC8
SOFTWARE
TYR C:373 , HOH C:412 , HOH C:413 , HOH C:414 , TYR D:373 , HOH D:412
BINDING SITE FOR RESIDUE K C 401
09
AC9
SOFTWARE
GLN B:299 , ARG C:288 , THR C:290 , PHE C:291 , LEU C:295 , ARG C:298 , ILE C:301 , GLN C:356 , ILE C:357 , GLY C:360 , LEU D:144 , VAL D:146 , THR D:147 , GLY D:152 , SER D:153 , PHE D:177 , ILE D:178 , THR D:179 , LYS D:221 , ILE D:381 , THR D:385 , GLU D:387
BINDING SITE FOR RESIDUE FDA D 420
10
BC1
SOFTWARE
THR D:93
BINDING SITE FOR RESIDUE K D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3r7ka2 (A:249-398)
1b: SCOP_d3r7kb2 (B:249-398)
1c: SCOP_d3r7kc2 (C:249-399)
1d: SCOP_d3r7kd2 (D:249-398)
2a: SCOP_d3r7ka1 (A:21-248)
2b: SCOP_d3r7kb1 (B:21-248)
2c: SCOP_d3r7kc1 (C:23-248)
2d: SCOP_d3r7kd1 (D:23-248)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Mycobacterium abscessus [TaxId: 561007]
(2)
1a
d3r7ka2
A:249-398
1b
d3r7kb2
B:249-398
1c
d3r7kc2
C:249-399
1d
d3r7kd2
D:249-398
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Mycobacterium abscessus [TaxId: 561007]
(2)
2a
d3r7ka1
A:21-248
2b
d3r7kb1
B:21-248
2c
d3r7kc1
C:23-248
2d
d3r7kd1
D:23-248
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Acyl_CoA_dh_1_3r7kD01 (D:249-398)
1b: PFAM_Acyl_CoA_dh_1_3r7kD02 (D:249-398)
1c: PFAM_Acyl_CoA_dh_1_3r7kD03 (D:249-398)
1d: PFAM_Acyl_CoA_dh_1_3r7kD04 (D:249-398)
2a: PFAM_Acyl_CoA_dh_M_3r7kD05 (D:143-195)
2b: PFAM_Acyl_CoA_dh_M_3r7kD06 (D:143-195)
2c: PFAM_Acyl_CoA_dh_M_3r7kD07 (D:143-195)
2d: PFAM_Acyl_CoA_dh_M_3r7kD08 (D:143-195)
3a: PFAM_Acyl_CoA_dh_N_3r7kD09 (D:26-139)
3b: PFAM_Acyl_CoA_dh_N_3r7kD10 (D:26-139)
3c: PFAM_Acyl_CoA_dh_N_3r7kD11 (D:26-139)
3d: PFAM_Acyl_CoA_dh_N_3r7kD12 (D:26-139)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
Acyl-CoA_dh_1
(24)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(1)
1a
Acyl-CoA_dh_1-3r7kD01
D:249-398
1b
Acyl-CoA_dh_1-3r7kD02
D:249-398
1c
Acyl-CoA_dh_1-3r7kD03
D:249-398
1d
Acyl-CoA_dh_1-3r7kD04
D:249-398
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(1)
2a
Acyl-CoA_dh_M-3r7kD05
D:143-195
2b
Acyl-CoA_dh_M-3r7kD06
D:143-195
2c
Acyl-CoA_dh_M-3r7kD07
D:143-195
2d
Acyl-CoA_dh_M-3r7kD08
D:143-195
Clan
:
no clan defined [family: Acyl-CoA_dh_N]
(23)
Family
:
Acyl-CoA_dh_N
(23)
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196)
(1)
3a
Acyl-CoA_dh_N-3r7kD09
D:26-139
3b
Acyl-CoA_dh_N-3r7kD10
D:26-139
3c
Acyl-CoA_dh_N-3r7kD11
D:26-139
3d
Acyl-CoA_dh_N-3r7kD12
D:26-139
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