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3R6T
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (90 KB)
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(1)
Title
:
RAT CATECHOL O-METHYLTRANSFERASE IN COMPLEX WITH THE BISUBSTRATE INHIBITOR 4'-FLUORO-4,5-DIHYDROXY-BIPHENYL-3-CARBOXYLIC ACID {(E)-3-[(2S,4R,5R)-4-HYDROXY-5-(6-METHYL-PURIN-9-YL)-TETRAHYDRO-FURAN-2-YL]-ALLYL}-AMIDE
Authors
:
A. Ehler, D. Schlatter, M. Stihle, J. Benz, M. G. Rudolph
Date
:
22 Mar 11 (Deposition) - 01 Feb 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Methyltransferase, Neurotransmitter Degradation, Alternative Initiation, Catecholamine Metabolism, Metal-Binding, S-Adenosyl-L- Methionine, Transmembrane, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ellermann, C. Lerner, G. Burgy, A. Ehler, C. Bissantz, R. Jakob-Roetne, R. Paulini, O. Allemann, H. Tissot, D. Grunstein, M. Stihle, F. Diederich, M. G. Rudolph
Catechol-O-Methyltransferase In Complex With Substituted 3'-Deoxyribose Bisubstrate Inhibitors.
Acta Crystallogr. , Sect. D V. 68 253 2012
[
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Hetero Components
(6, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: DITHIANE DIOL (DTDa)
3a: 4'-FLUORO-4,5-DIHYDROXY-N-{(2E)-3-... (LU1a)
4a: MAGNESIUM ION (MGa)
5a: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFON... (NHEa)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
DTD
1
Ligand/Ion
DITHIANE DIOL
3
LU1
1
Ligand/Ion
4'-FLUORO-4,5-DIHYDROXY-N-{(2E)-3-[(2S,4R,5R)-4-HYDROXY-5-(6-METHYL-9H-PURIN-9-YL)TETRAHYDROFURAN-2-YL]PROP-2-EN-1-YL}BIPHENYL-3-CARBOXAMIDE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NHE
1
Ligand/Ion
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
6
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:184 , ASP A:212 , ASN A:213 , LU1 A:307 , HOH A:634
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
ASN A:84 , VAL A:85 , SER A:115
BINDING SITE FOR RESIDUE CL A 302
3
AC3
SOFTWARE
ASP A:87 , ALA A:88 , TYR A:243
BINDING SITE FOR RESIDUE CL A 303
4
AC4
SOFTWARE
ILE A:134 , GLN A:163 , ARG A:189 , HOH A:649 , HOH A:653
BINDING SITE FOR RESIDUE CL A 304
5
AC5
SOFTWARE
PRO A:125 , GLY A:126 , ARG A:128 , LYS A:154
BINDING SITE FOR RESIDUE SO4 A 305
6
AC6
SOFTWARE
ASP A:46 , THR A:47 , LYS A:48 , ARG A:51 , HOH A:478 , HOH A:615
BINDING SITE FOR RESIDUE SO4 A 306
7
AC7
SOFTWARE
MET A:83 , GLY A:109 , GLU A:133 , ILE A:134 , ASN A:135 , ALA A:140 , GLN A:143 , GLN A:144 , GLY A:160 , ALA A:161 , SER A:162 , GLN A:163 , ASP A:184 , HIS A:185 , TRP A:186 , LYS A:187 , ARG A:189 , ASP A:212 , ASN A:213 , PRO A:217 , LEU A:241 , GLU A:242 , MG A:301 , HOH A:438 , HOH A:483 , HOH A:529 , HOH A:534 , HOH A:634 , HOH A:677
BINDING SITE FOR RESIDUE LU1 A 307
8
AC8
SOFTWARE
LEU A:195 , GLU A:198 , TYR A:225 , SER A:231 , PHE A:232 , TYR A:240 , HOH A:420 , HOH A:506 , HOH A:583 , HOH A:690 , HOH A:716
BINDING SITE FOR RESIDUE DTD A 308
9
AC9
SOFTWARE
GLU A:80 , TRP A:81 , ALA A:139 , GLN A:143 , ILE A:157 , MET A:244 , HOH A:424 , HOH A:445 , HOH A:447 , HOH A:470 , HOH A:471 , HOH A:622 , HOH A:633 , HOH A:717
BINDING SITE FOR RESIDUE NHE A 309
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(4, 4)
Info
All Exons
Exon 1.2 (A:46-90)
Exon 1.3 (A:90-154)
Exon 1.4 (A:155-198)
Exon 1.5 (A:199-258)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000050269
1
ENSRNOE00000455167
chr11:
84561591-84561757
167
COMT_RAT
-
0
0
-
-
1.2
ENSRNOT00000050269
2
ENSRNOE00000018229
chr11:
84576767-84577034
268
COMT_RAT
1-90
90
1
A:46-90
45
1.3
ENSRNOT00000050269
3
ENSRNOE00000018230
chr11:
84577399-84577592
194
COMT_RAT
90-154
65
1
A:90-154
65
1.4
ENSRNOT00000050269
4
ENSRNOE00000018231
chr11:
84577902-84578033
132
COMT_RAT
155-198
44
1
A:155-198
44
1.5
ENSRNOT00000050269
5
ENSRNOE00000317236
chr11:
84580831-84581705
875
COMT_RAT
199-264
66
1
A:199-258
60
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3r6ta_ (A:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
COMT-like
(31)
Protein domain
:
automated matches
(25)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(20)
1a
d3r6ta_
A:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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