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3R67
Asym. Unit
Info
Asym.Unit (493 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (124 KB)
Biol.Unit 3 (125 KB)
Biol.Unit 4 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDASE (BT_4094) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.30 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
21 Mar 11 (Deposition) - 13 Apr 11 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
5-Bladed Beta Propeller Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Glycosidase (Bt_4094) From Bacteroides Thetaiotaomicron Vpi-5482 At 2. 30 A Resolution
To Be Published
[
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Hetero Components
(2, 44)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
20
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:74 , TYR A:303 , TYR A:339 , PHE A:345 , ASP A:364 , HOH A:1246 , HOH A:1426
BINDING SITE FOR RESIDUE EDO A 382
02
AC2
SOFTWARE
ILE A:255 , THR A:256 , ARG A:321 , HOH A:522 , HOH A:1213
BINDING SITE FOR RESIDUE EDO A 383
03
AC3
SOFTWARE
PRO A:325 , PHE A:326
BINDING SITE FOR RESIDUE EDO A 384
04
AC4
SOFTWARE
HOH A:972
BINDING SITE FOR RESIDUE EDO A 385
05
AC5
SOFTWARE
GLU A:141 , TRP A:160 , ALA A:165 , PHE A:197 , LYS A:199
BINDING SITE FOR RESIDUE EDO A 388
06
AC6
SOFTWARE
ASN A:288 , LYS A:289 , GLY A:291 , TYR A:298 , HOH A:1063
BINDING SITE FOR RESIDUE EDO A 389
07
AC7
SOFTWARE
ALA A:77 , THR A:78 , VAL A:145 , GLN A:212 , PRO A:272 , LEU A:349 , HOH A:734 , HOH A:990 , HOH A:1140 , HOH A:1516
BINDING SITE FOR RESIDUE EDO A 392
08
AC8
SOFTWARE
ASN B:74 , TYR B:303 , ASP B:364 , HOH B:961 , HOH B:1418
BINDING SITE FOR RESIDUE EDO B 379
09
AC9
SOFTWARE
GLU B:141 , TRP B:160 , LYS B:199 , HOH B:478 , HOH B:1255 , HOH B:1329
BINDING SITE FOR RESIDUE EDO B 390
10
BC1
SOFTWARE
VAL B:254 , THR B:256 , ARG B:321 , HOH B:610
BINDING SITE FOR RESIDUE EDO B 391
11
BC2
SOFTWARE
GLY A:43 , LYS B:132 , GLU B:133 , TRP B:136 , HOH B:460
BINDING SITE FOR RESIDUE EDO B 395
12
BC3
SOFTWARE
LYS C:199 , EDO C:380 , EDO C:386 , HOH C:413 , HOH C:427 , HOH C:878 , HOH C:1146
BINDING SITE FOR RESIDUE EDO C 378
13
BC4
SOFTWARE
ASN C:74 , TYR C:303 , TYR C:339 , ASP C:364 , EDO C:378 , HOH C:878 , HOH C:1181
BINDING SITE FOR RESIDUE EDO C 380
14
BC5
SOFTWARE
VAL C:254 , ILE C:255 , THR C:256 , ARG C:321 , HOH C:1269
BINDING SITE FOR RESIDUE EDO C 381
15
BC6
SOFTWARE
GLU C:141 , TRP C:160 , LYS C:199 , EDO C:378 , HOH C:1146
BINDING SITE FOR RESIDUE EDO C 386
16
BC7
SOFTWARE
ALA C:77 , THR C:78 , VAL C:145 , ALA C:146 , GLN C:212 , PRO C:272 , LEU C:349 , HOH C:1512 , HOH C:1513 , HOH C:1529
BINDING SITE FOR RESIDUE EDO C 387
17
BC8
SOFTWARE
SER C:70 , ASP C:92 , ASN C:93 , ALA C:95 , VAL C:96 , HOH C:1298
BINDING SITE FOR RESIDUE EDO C 393
18
BC9
SOFTWARE
ASN D:74 , TYR D:303 , PHE D:345 , ASP D:364 , HOH D:484 , HOH D:1315
BINDING SITE FOR RESIDUE EDO D 394
19
CC1
SOFTWARE
GLU D:141 , TRP D:160 , ALA D:165 , LYS D:199
BINDING SITE FOR RESIDUE EDO D 396
20
CC2
SOFTWARE
TYR D:109 , MSE D:119 , HOH D:1170
BINDING SITE FOR RESIDUE EDO D 397
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_DUF377_3r67D01 (D:39-376)
1b: PFAM_DUF377_3r67D02 (D:39-376)
1c: PFAM_DUF377_3r67D03 (D:39-376)
1d: PFAM_DUF377_3r67D04 (D:39-376)
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
B_Fructosidase
(34)
Family
:
DUF377
(2)
Bacteroides thetaiotaomicron
(1)
1a
DUF377-3r67D01
D:39-376
1b
DUF377-3r67D02
D:39-376
1c
DUF377-3r67D03
D:39-376
1d
DUF377-3r67D04
D:39-376
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]
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (493 KB)
Header - Asym.Unit
Biol.Unit 1 (124 KB)
Header - Biol.Unit 1
Biol.Unit 2 (124 KB)
Header - Biol.Unit 2
Biol.Unit 3 (125 KB)
Header - Biol.Unit 3
Biol.Unit 4 (123 KB)
Header - Biol.Unit 4
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