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3R5Q
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SHEEP LACTOPEROXIDASE IN COMPLEX WITH TETRAHYDROFURAN AT 2.7 A RESOLUTION
Authors
:
S. Yamini, R. P. Singh, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Sin
Date
:
19 Mar 11 (Deposition) - 06 Apr 11 (Release) - 29 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lactoperoxidase, Sheep, Tetrahydrofuran, Heme Moiety, Distal Binding Site, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yamini, R. P. Singh, A. K. Singh, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Sheep Lactoperoxidase In Complex With Tetrahydrofuran At 2. 7 A Resolution
To Be Published
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Hetero Components
(8, 19)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: 1,2-ETHANEDIOL (EDOa)
3a: TETRAHYDROFURAN (FU1a)
3b: TETRAHYDROFURAN (FU1b)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
5a: IODIDE ION (IODa)
5b: IODIDE ION (IODb)
5c: IODIDE ION (IODc)
5d: IODIDE ION (IODd)
5e: IODIDE ION (IODe)
5f: IODIDE ION (IODf)
5g: IODIDE ION (IODg)
5h: IODIDE ION (IODh)
5i: IODIDE ION (IODi)
5j: IODIDE ION (IODj)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7a: THIOCYANATE ION (SCNa)
8a: PHOSPHOSERINE (SEPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
FU1
2
Ligand/Ion
TETRAHYDROFURAN
4
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
IOD
10
Ligand/Ion
IODIDE ION
6
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SCN
1
Ligand/Ion
THIOCYANATE ION
8
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:205 , SER A:208 , ALA A:214 , VAL A:215 , GLN A:217
BINDING SITE FOR RESIDUE NAG A 598
02
AC2
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388
BINDING SITE FOR RESIDUE NAG A 602
03
AC3
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 1001
04
AC4
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , GLU A:258 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , LEU A:417 , LEU A:433 , ILE A:436 , ARG A:440 , FU1 A:596
BINDING SITE FOR RESIDUE HEM A 605
05
AC5
SOFTWARE
TRP A:46 , VAL A:342 , TRP A:452
BINDING SITE FOR RESIDUE IOD A 707
06
AC6
SOFTWARE
ASN A:80 , PRO A:145
BINDING SITE FOR RESIDUE IOD A 708
07
AC7
SOFTWARE
GLU A:363 , ARG A:397 , THR A:560 , LYS A:561
BINDING SITE FOR RESIDUE IOD A 711
08
AC8
SOFTWARE
HIS A:565 , ALA A:566 , PHE A:567
BINDING SITE FOR RESIDUE IOD A 712
09
AC9
SOFTWARE
SER A:359
BINDING SITE FOR RESIDUE IOD A 713
10
BC1
SOFTWARE
LYS A:462 , THR A:463
BINDING SITE FOR RESIDUE IOD A 715
11
BC2
SOFTWARE
GLN A:217
BINDING SITE FOR RESIDUE IOD A 718
12
BC3
SOFTWARE
PRO A:424
BINDING SITE FOR RESIDUE IOD A 719
13
BC4
SOFTWARE
HIS A:377 , HIS A:429
BINDING SITE FOR RESIDUE IOD A 720
14
BC5
SOFTWARE
ARG A:96 , ARG A:504 , ARG A:506
BINDING SITE FOR RESIDUE EDO A 722
15
BC6
SOFTWARE
ASN A:230 , SER A:235 , CYS A:248
BINDING SITE FOR RESIDUE SCN A 615
16
BC7
SOFTWARE
GLN A:105 , HIS A:109 , ARG A:255 , GLU A:258 , FU1 A:597 , HEM A:605
BINDING SITE FOR RESIDUE FU1 A 596
17
BC8
SOFTWARE
SER A:254 , ARG A:255 , GLU A:258 , PHE A:381 , PRO A:424 , FU1 A:596
BINDING SITE FOR RESIDUE FU1 A 597
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_An_peroxidase_3r5qA01 (A:21-567)
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Clans
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Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Ovis aries (Sheep)
(15)
1a
An_peroxidase-3r5qA01
A:21-567
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Chain A
Asymmetric Unit 1
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