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3R5M
Asym. Unit
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Asym.Unit (79 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RXRALPHALBD COMPLEXED WITH THE AGONIST MAGNOLOL
Authors
:
H. Zhang, L. Chen, J. Chen, L. Hu, H. Jiang, X. Shen
Date
:
18 Mar 11 (Deposition) - 08 Feb 12 (Release) - 08 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nuclear Receptor, Transcription Factor, Transcription-Transcription Agonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. Zhang, X. Xu, L. Chen, J. Chen, L. Hu, H. Jiang, X. Shen
Molecular Determinants Of Magnolol Targeting Both Rxr(Alpha And Ppar(Gamma).
Plos One V. 6 28253 2011
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 5,5'-DI(PROP-2-EN-1-YL)BIPHENYL-2,... (MLOa)
1b: 5,5'-DI(PROP-2-EN-1-YL)BIPHENYL-2,... (MLOb)
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No.
Name
Count
Type
Full Name
1
MLO
2
Ligand/Ion
5,5'-DI(PROP-2-EN-1-YL)BIPHENYL-2,2'-DIOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:268 , ALA A:272 , PHE A:313 , PHE A:346 , CYS A:432 , LEU A:436
BINDING SITE FOR RESIDUE MLO A 1
2
AC2
SOFTWARE
ILE C:268 , ASN C:306 , PHE C:313 , CYS C:432 , LEU C:436 , PHE C:439
BINDING SITE FOR RESIDUE MLO C 1
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050582 (A327S, chain A/C, )
2: VAR_014621 (S336I, chain A/C, )
3: VAR_050583 (A398V, chain A/C, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050582
A
327
S
RXRA_HUMAN
Polymorphism
1805345
A/C
A
327
S
2
UniProt
VAR_014621
S
336
I
RXRA_HUMAN
Polymorphism
1805345
A/C
S
336
I
3
UniProt
VAR_050583
A
398
V
RXRA_HUMAN
Polymorphism
11542209
A/C
A
398
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d3r5mc_ (C:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Retinoid-X receptor alpha (RXR-alpha)
(36)
Human (Homo sapiens) [TaxId: 9606]
(33)
1a
d3r5mc_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (79 KB)
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