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3R1X
Biol. Unit 2
Info
Asym.Unit (417 KB)
Biol.Unit 1 (211 KB)
Biol.Unit 2 (200 KB)
Biol.Unit 3 (406 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 2-OXO-3-DEOXYGALACTONATE KINASE FROM KLEBSIELLA PNEUMONIAE
Authors
:
K. Michalska, M. E. Cuff, C. Tesar, B. Feldmann, A. Joachimiak, Midwest For Structural Genomics (Mcsg)
Date
:
11 Mar 11 (Deposition) - 13 Apr 11 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, 2-Oxo-3-Deoxygalactonate Kinase, 2-Dehydro-3- Deoxygalactonokinase, 2-Keto-3-Deoxygalactonate Kinase, Deley- Doudoroff Pathway, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Michalska, M. E. Cuff, C. Tesar, B. Feldmann, A. Joachimiak
Structure Of 2-Oxo-3-Deoxygalactonate Kinase From Klebsiell Pneumoniae.
Acta Crystallogr. , Sect. D V. 67 678 2011
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMT
2
Ligand/Ion
FORMIC ACID
2
GOL
7
Ligand/Ion
GLYCEROL
3
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(11, 11)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC4 (SOFTWARE)
04: BC5 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC7 (SOFTWARE)
07: BC8 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
SER A:69 , ASN A:70 , GLY A:72 , TRP A:73 , ILE A:75 , HOH A:455 , GLN C:169 , LEU C:177 , PRO C:178 , PRO C:179
BINDING SITE FOR RESIDUE GOL A 296
02
AC9
SOFTWARE
ALA B:189 , GLN B:220 , GLU D:32
BINDING SITE FOR RESIDUE GOL B 298
03
BC4
SOFTWARE
ALA C:189 , PRO C:217 , GLN C:220
BINDING SITE FOR RESIDUE GOL C 293
04
BC5
SOFTWARE
ASP D:154 , ARG D:156 , THR D:240
BINDING SITE FOR RESIDUE FMT D 293
05
BC6
SOFTWARE
GLU D:223 , SER D:257 , GLN D:261 , HOH D:308 , HOH D:379
BINDING SITE FOR RESIDUE GOL D 294
06
BC7
SOFTWARE
ASP D:9 , GLU D:119 , GLN D:122 , PHE D:279
BINDING SITE FOR RESIDUE GOL D 295
07
BC8
SOFTWARE
GLY D:139 , THR D:160 , GLY D:161 , SER D:226 , LEU D:255 , HOH D:347 , HOH D:378 , HOH D:387
BINDING SITE FOR RESIDUE GOL D 296
08
BC9
SOFTWARE
GLU D:119 , GLY D:139 , THR D:140 , HIS D:141 , GOL D:299 , HOH D:309
BINDING SITE FOR RESIDUE GOL D 297
09
CC1
SOFTWARE
GLN D:180 , GLU D:181 , THR D:182 , GLU D:223 , ARG D:258
BINDING SITE FOR RESIDUE GOL D 298
10
CC2
SOFTWARE
GLN D:122 , GLY D:275 , ASP D:276 , GOL D:297 , HOH D:302 , HOH D:339 , HOH D:369
BINDING SITE FOR RESIDUE GOL D 299
11
CC3
SOFTWARE
GLY D:89 , GLN D:90 , LEU D:92
BINDING SITE FOR RESIDUE FMT D 300
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_DGOK_3r1xD01 (D:9-288)
1b: PFAM_DGOK_3r1xD02 (D:9-288)
1c: PFAM_DGOK_3r1xD03 (D:9-288)
1d: PFAM_DGOK_3r1xD04 (D:9-288)
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Clan
:
no clan defined [family: DGOK]
(1)
Family
:
DGOK
(1)
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
(1)
1a
DGOK-3r1xD01
D:9-288
1b
DGOK-3r1xD02
D:9-288
1c
DGOK-3r1xD03
D:9-288
1d
DGOK-3r1xD04
D:9-288
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Asymmetric Unit 1
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