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3R1H
Biol. Unit 1
Info
Asym.Unit (158 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CLASS I LIGASE RIBOZYME-SUBSTRATE PRELIGATION COMPLEX, C47U MUTANT, CA2+ BOUND
Authors
:
D. M. Shechner, D. P. Bartel
Date
:
10 Mar 11 (Deposition) - 31 Aug 11 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Ligase Ribozyme, Catalytic Rna, Ribozyme, Rna Binding Protein-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Shechner, D. P. Bartel
The Structural Basis Of Rna-Catalyzed Rna Polymerization.
Nat. Struct. Mol. Biol. V. 18 1036 2011
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23a)
1b: ADENOSINE-5'-PHOSPHATE-2',3'-CYCLI... (A23b)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
2s: CALCIUM ION (CAs)
2t: CALCIUM ION (CAt)
2u: CALCIUM ION (CAu)
2v: CALCIUM ION (CAv)
2w: CALCIUM ION (CAw)
2x: CALCIUM ION (CAx)
2y: CALCIUM ION (CAy)
2z: CALCIUM ION (CAz)
3a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
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Label:
No.
Name
Count
Type
Full Name
1
A23
1
Mod. Nucleotide
ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GTP
1
Mod. Nucleotide
GUANOSINE-5'-TRIPHOSPHATE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: CC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
A C:31 , A C:32 , HOH C:1033 , HOH C:1034 , HOH C:1035 , HOH C:1036
BINDING SITE FOR RESIDUE CA C 1019
02
AC2
SOFTWARE
C C:70 , A C:71 , G C:72 , U C:106 , HOH C:1037 , HOH C:1038 , HOH C:1039
BINDING SITE FOR RESIDUE CA C 1020
03
AC3
SOFTWARE
A C:3 , A C:4 , A C:114 , A C:115 , HOH C:1040 , HOH C:1041
BINDING SITE FOR RESIDUE CA C 1021
04
AC4
SOFTWARE
G C:46 , U C:47 , G C:74
BINDING SITE FOR RESIDUE CA C 1022
05
AC5
SOFTWARE
C C:104
BINDING SITE FOR RESIDUE CA C 1024
06
AC6
SOFTWARE
U C:68
BINDING SITE FOR RESIDUE CA C 1025
07
AC7
SOFTWARE
C C:110
BINDING SITE FOR RESIDUE CA C 1027
08
AC9
SOFTWARE
G C:2 , HOH C:1042 , HOH C:1043 , HOH C:1044 , HOH C:1045 , HOH C:1046
BINDING SITE FOR RESIDUE CA C 1028
09
BC1
SOFTWARE
A B:-1 , GTP C:1 , A C:29 , C C:30 , HOH C:1047 , HOH C:1048 , HOH C:1049
BINDING SITE FOR RESIDUE CA C 1029
10
BC2
SOFTWARE
GTP C:1 , A C:31
BINDING SITE FOR RESIDUE CA C 1030
11
BC3
SOFTWARE
A C:98 , C C:99
BINDING SITE FOR RESIDUE CA C 1031
12
CC1
SOFTWARE
A C:43 , U F:34 , HOH F:1031
BINDING SITE FOR RESIDUE CA C 1032
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:10-89)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SNRPA_HUMAN
10-89
208-282
1
A:10-89
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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