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3QYZ
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ERK2 IN COMPLEX WITH AN INHIBITOR
Authors
:
M. Gelin, S. Pochet, F. Hoh, M. Pirochi, J. -F. Guichou, J. -L. Ferrer, G.
Date
:
04 Mar 11 (Deposition) - 24 Aug 11 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Serine/Threonine-Protein Kinase, Atp-Binding Cell Cycle, Phosphorylation, Protein Kinase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Le Maire, M. Gelin, S. Pochet, F. Hoh, M. Pirocchi, J. F. Guichou, J. L. Ferrer, G. Labesse
In-Plate Protein Crystallization, In Situ Ligand Soaking An X-Ray Diffraction.
Acta Crystallogr. , Sect. D V. 67 747 2011
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
3e: DIMETHYL SULFOXIDE (DMSe)
3f: DIMETHYL SULFOXIDE (DMSf)
3g: DIMETHYL SULFOXIDE (DMSg)
3h: DIMETHYL SULFOXIDE (DMSh)
3i: DIMETHYL SULFOXIDE (DMSi)
3j: DIMETHYL SULFOXIDE (DMSj)
3k: DIMETHYL SULFOXIDE (DMSk)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
5a: 5'-AZIDO-8-BROMO-5'-DEOXYADENOSINE (Z8Ba)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
1
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CME
1
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
3
DMS
11
Ligand/Ion
DIMETHYL SULFOXIDE
4
SO4
2
Ligand/Ion
SULFATE ION
5
Z8B
1
Ligand/Ion
5'-AZIDO-8-BROMO-5'-DEOXYADENOSINE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:30 , GLU A:31 , GLY A:32 , VAL A:37 , ALA A:50 , GLN A:103 , ASP A:104 , LEU A:105 , MET A:106 , ASP A:109 , LYS A:112 , LEU A:154 , DMS A:362 , HOH A:563 , HOH A:721
BINDING SITE FOR RESIDUE Z8B A 359
02
AC2
SOFTWARE
LYS A:136 , HIS A:139 , SER A:140 , LYS A:205 , GLU A:303 , HOH A:730 , HOH A:762
BINDING SITE FOR RESIDUE DMS A 360
03
AC3
SOFTWARE
THR A:188 , TRP A:190 , HOH A:627
BINDING SITE FOR RESIDUE DMS A 361
04
AC4
SOFTWARE
GLY A:32 , ALA A:33 , TYR A:34 , GLY A:35 , Z8B A:359
BINDING SITE FOR RESIDUE DMS A 362
05
AC5
SOFTWARE
LEU A:114 , ASN A:222
BINDING SITE FOR RESIDUE DMS A 363
06
AC6
SOFTWARE
ASN A:236 , GLY A:240 , LYS A:268
BINDING SITE FOR RESIDUE DMS A 364
07
AC7
SOFTWARE
SER A:221 , ARG A:223 , PRO A:224 , ILE A:225 , PHE A:277
BINDING SITE FOR RESIDUE DMS A 365
08
AC8
SOFTWARE
ASP A:122 , HIS A:123 , ILE A:254 , ARG A:259 , TYR A:314
BINDING SITE FOR RESIDUE DMS A 366
09
AC9
SOFTWARE
GLU A:79 , ASN A:80 , TYR A:126 , GLN A:130 , ARG A:133 , HOH A:581
BINDING SITE FOR RESIDUE DMS A 367
10
BC1
SOFTWARE
HIS A:297 , GLN A:304 , HOH A:451 , HOH A:589
BINDING SITE FOR RESIDUE DMS A 368
11
BC2
SOFTWARE
HIS A:118 , LEU A:119 , LEU A:220 , ASN A:279 , ALA A:280 , HOH A:428 , HOH A:501 , HOH A:624
BINDING SITE FOR RESIDUE DMS A 369
12
BC3
SOFTWARE
ARG A:77 , TYR A:137 , ALA A:323 , GLU A:324 , HOH A:775
BINDING SITE FOR RESIDUE DMS A 370
13
BC4
SOFTWARE
TYR A:185 , ARG A:189 , ARG A:192 , TYR A:231 , HOH A:472
BINDING SITE FOR RESIDUE SO4 A 371
14
BC5
SOFTWARE
ARG A:65 , ARG A:68 , LEU A:168 , ARG A:170
BINDING SITE FOR RESIDUE SO4 A 372
15
BC6
SOFTWARE
LEU A:232 , TYR A:261
BINDING SITE FOR RESIDUE BME A 373
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:29-53)
2: MAPK (A:57-159)
3: PROTEIN_KINASE_ST (A:143-155)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MK01_RAT
29-53
1
A:29-53
2
MAPK
PS01351
MAP kinase signature.
MK01_RAT
57-159
1
A:57-159
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MK01_RAT
143-155
1
A:143-155
[
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Exons
(9, 9)
Info
All Exons
Exon 1.1 (A:8-38 (gaps))
Exon 1.2 (A:38-99)
Exon 1.3 (A:99-162)
Exon 1.4 (A:163-193)
Exon 1.5a (A:194-201)
Exon 1.6 (A:202-240)
Exon 1.7b (A:240-284)
Exon 1.8 (A:284-320)
Exon 1.9 (A:321-354 (gaps))
View:
Select:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5a
06: Boundary 1.5a/1.6
07: Boundary 1.6/1.7b
08: Boundary 1.7b/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000002533
1
ENSRNOE00000286744
chr11:
86030389-86030103
287
MK01_RAT
1-38
38
1
A:8-38 (gaps)
31
1.2
ENSRNOT00000002533
2
ENSRNOE00000017747
chr11:
85995752-85995570
183
MK01_RAT
38-99
62
1
A:38-99
62
1.3
ENSRNOT00000002533
3
ENSRNOE00000017750
chr11:
85993936-85993747
190
MK01_RAT
99-162
64
1
A:99-162
64
1.4
ENSRNOT00000002533
4
ENSRNOE00000217983
chr11:
85988938-85988846
93
MK01_RAT
163-193
31
1
A:163-193
31
1.5a
ENSRNOT00000002533
5a
ENSRNOE00000427769
chr11:
85988844-85988821
24
MK01_RAT
194-201
8
1
A:194-201
8
1.6
ENSRNOT00000002533
6
ENSRNOE00000329524
chr11:
85986011-85985897
115
MK01_RAT
202-240
39
1
A:202-240
39
1.7b
ENSRNOT00000002533
7b
ENSRNOE00000017757
chr11:
85985658-85985527
132
MK01_RAT
240-284
45
1
A:240-284
45
1.8
ENSRNOT00000002533
8
ENSRNOE00000017758
chr11:
85976268-85976159
110
MK01_RAT
284-320
37
1
A:284-320
37
1.9
ENSRNOT00000002533
9
ENSRNOE00000017759
chr11:
85973300-85973175
126
MK01_RAT
321-358
38
1
A:321-354 (gaps)
34
1.10
ENSRNOT00000002533
10
ENSRNOE00000017763
chr11:
85968942-85968732
211
MK01_RAT
-
0
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3qyza_ (A:)
View:
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Classes
(
)
(
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Folds
(
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(
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
MAP kinase Erk2
(18)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(17)
1a
d3qyza_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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