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3QYM
Biol. Unit 1
Info
Asym.Unit (602 KB)
Biol.Unit 1 (299 KB)
Biol.Unit 2 (298 KB)
Biol.Unit 3 (300 KB)
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Title
:
STRUCTURE OF P63 DNA BINDING DOMAIN IN COMPLEX WITH A 10 BASE PAIR A/T RICH RESPONSE ELEMENT HALF SITE
Authors
:
O. Herzberg, C. Chen
Date
:
03 Mar 11 (Deposition) - 06 Apr 11 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,I,J,K,L (1x)
Biol. Unit 2: E,F,G,H,M,N,O,P (1x)
Biol. Unit 3: C,D,E,F,K,L,M,N (1x)
Keywords
:
B Dna Double Helix, Protein-Dna Complex, Zinc Binding, Beta Sandwich, Greek Key, Transcription Factor, Dna Binding, Nucleus, Transcription Activator-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chen, N. Gorlatova, Z. Kelman, O. Herzberg
Structures Of P63 Dna Binding Domain In Complexes With Half-Site And With Spacer-Containing Full Response Elements
Proc. Natl. Acad. Sci. Usa V. 108 6456 2011
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
View:
Select:
Label:
Sorry, no Info available
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:205 , HIS A:208 , CYS A:269 , CYS A:273
BINDING SITE FOR RESIDUE ZN A 901
2
AC2
SOFTWARE
CYS B:205 , HIS B:208 , CYS B:269 , CYS B:273
BINDING SITE FOR RESIDUE ZN B 901
3
AC3
SOFTWARE
CYS C:205 , HIS C:208 , CYS C:269 , CYS C:273
BINDING SITE FOR RESIDUE ZN C 901
4
AC4
SOFTWARE
CYS D:205 , HIS D:208 , CYS D:269 , CYS D:273
BINDING SITE FOR RESIDUE ZN D 901
[
close Site info
]
SAPs(SNPs)/Variants
(26, 102)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_020866 (S145L, chain B/C/D, )
02: VAR_020867 (A148P, chain A/C/D, )
03: VAR_020868 (Q165L, chain A/B/C/D, )
04: VAR_032737 (K193E, chain A/B/C/D, )
05: VAR_020869 (K194E, chain A/B/C/D, )
06: VAR_020870 (R204Q, chain A/B/C/D, )
07: VAR_020871 (R204W, chain A/B/C/D, )
08: VAR_032738 (R227Q, chain A/B/C/D, )
09: VAR_020872 (P240H, chain A/B/C/D, )
10: VAR_032739 (C269Y, chain A/B/C/D, )
11: VAR_032740 (S272N, chain A/B/C/D, )
12: VAR_032741 (R279C, chain A/B/C/D, )
13: VAR_020873 (R279H, chain A/B/C/D, )
14: VAR_032742 (R279Q, chain A/B/C/D, )
15: VAR_020874 (R280C, chain A/B/C/D, )
16: VAR_032743 (R280H, chain A/B/C/D, )
17: VAR_032744 (R280S, chain A/B/C/D, )
18: VAR_020875 (R298Q, chain A/B/C/D, )
19: VAR_020876 (R304Q, chain A/B/C/D, )
20: VAR_032745 (R304W, chain A/B/C/D, )
21: VAR_020877 (C306R, chain A/B/C/D, )
22: VAR_032746 (C308S, chain A/B/C/D, )
23: VAR_032747 (P309S, chain A/B/C/D, )
24: VAR_020878 (D312G, chain A/B/C/D, )
25: VAR_032748 (D312H, chain A/B/C/D, )
26: VAR_035127 (R313G, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020866
S
184
L
P63_HUMAN
Unclassified
---
B/C/D
S
145
L
02
UniProt
VAR_020867
A
187
P
P63_HUMAN
Unclassified
---
A/C/D
A
148
P
03
UniProt
VAR_020868
Q
204
L
P63_HUMAN
Unclassified
---
A/B/C/D
Q
165
L
04
UniProt
VAR_032737
K
232
E
P63_HUMAN
Disease (SHFM4)
---
A/B/C/D
K
193
E
05
UniProt
VAR_020869
K
233
E
P63_HUMAN
Disease (SHFM4)
---
A/B/C/D
K
194
E
06
UniProt
VAR_020870
R
243
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
204
Q
07
UniProt
VAR_020871
R
243
W
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
204
W
08
UniProt
VAR_032738
R
266
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
227
Q
09
UniProt
VAR_020872
P
279
H
P63_HUMAN
Unclassified
---
A/B/C/D
P
240
H
10
UniProt
VAR_032739
C
308
Y
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
C
269
Y
11
UniProt
VAR_032740
S
311
N
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
S
272
N
12
UniProt
VAR_032741
R
318
C
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
279
C
13
UniProt
VAR_020873
R
318
H
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
279
H
14
UniProt
VAR_032742
R
318
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
279
Q
15
UniProt
VAR_020874
R
319
C
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
280
C
16
UniProt
VAR_032743
R
319
H
P63_HUMAN
Disease (SHFM4)
---
A/B/C/D
R
280
H
17
UniProt
VAR_032744
R
319
S
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
280
S
18
UniProt
VAR_020875
R
337
Q
P63_HUMAN
Disease (ADULT syndrome)
---
A/B/C/D
R
298
Q
19
UniProt
VAR_020876
R
343
Q
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
304
Q
20
UniProt
VAR_032745
R
343
W
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
R
304
W
21
UniProt
VAR_020877
C
345
R
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
C
306
R
22
UniProt
VAR_032746
C
347
S
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
C
308
S
23
UniProt
VAR_032747
P
348
S
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
P
309
S
24
UniProt
VAR_020878
D
351
G
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
D
312
G
25
UniProt
VAR_032748
D
351
H
P63_HUMAN
Disease (EEC3)
---
A/B/C/D
D
312
H
26
UniProt
VAR_035127
R
352
G
P63_HUMAN
Disease (OFC8)
---
A/B/C/D
R
313
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: P53 (A:268-280,B:268-280,C:268-280,D:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
P53
PS00348
p53 family signature.
P63_HUMAN
307-319
4
A:268-280
B:268-280
C:268-280
D:268-280
-
-
-
-
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_P53_3qymH01 (H:127-320)
1b: PFAM_P53_3qymH02 (H:127-320)
1c: PFAM_P53_3qymH03 (H:127-320)
1d: PFAM_P53_3qymH04 (H:127-320)
1e: PFAM_P53_3qymH05 (H:127-320)
1f: PFAM_P53_3qymH06 (H:127-320)
1g: PFAM_P53_3qymH07 (H:127-320)
1h: PFAM_P53_3qymH08 (H:127-320)
View:
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Clans
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(
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(
)
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(
)
(
)
Clan
:
P53-like
(54)
Family
:
P53
(22)
Homo sapiens (Human)
(22)
1a
P53-3qymH01
H:127-320
1b
P53-3qymH02
H:127-320
1c
P53-3qymH03
H:127-320
1d
P53-3qymH04
H:127-320
1e
P53-3qymH05
H:127-320
1f
P53-3qymH06
H:127-320
1g
P53-3qymH07
H:127-320
1h
P53-3qymH08
H:127-320
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