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3QY9
Asym. Unit
Info
Asym.Unit (336 KB)
Biol.Unit 1 (327 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE REDUCTASE FROM STAPHYLOCOCCUS AUREUS
Authors
:
T. S. Girish, B. Gopal
Date
:
03 Mar 11 (Deposition) - 03 Aug 11 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Rossmann Fold, Reductase, Nadh, Nadph, Dihydrodipicolinate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. S. Girish, V. Navratna, B. Gopal
Structure And Nucleotide Specificity Of Staphylococcus Aureus Dihydrodipicolinate Reductase (Dapb)
Febs Lett. V. 585 2561 2011
[
close entry info
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Hetero Components
(3, 26)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
SO4
22
Ligand/Ion
SULFATE ION
[
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]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:136 , LYS A:213 , SO4 A:243 , HOH A:273 , HOH A:423
BINDING SITE FOR RESIDUE SO4 A 241
02
AC2
SOFTWARE
LYS A:139 , SER A:144 , GLY A:145 , THR A:146 , HOH A:268 , HOH A:308 , HOH A:505 , HOH A:699
BINDING SITE FOR RESIDUE SO4 A 242
03
AC3
SOFTWARE
LYS A:139 , VAL A:140 , ASP A:141 , SO4 A:241 , HOH A:423 , HOH A:601
BINDING SITE FOR RESIDUE SO4 A 243
04
AC4
SOFTWARE
ALA A:10 , ARG A:14 , LYS A:213 , HOH A:508
BINDING SITE FOR RESIDUE SO4 A 244
05
AC5
SOFTWARE
ARG A:14 , SER A:212 , LYS A:213 , HOH A:269 , HOH A:590
BINDING SITE FOR RESIDUE GOL A 245
06
AC6
SOFTWARE
LYS B:138 , LYS B:139 , VAL B:140 , ASP B:141 , SO4 B:245 , HOH B:279 , HOH D:303 , HOH D:304
BINDING SITE FOR RESIDUE ACT B 241
07
AC7
SOFTWARE
ARG B:14 , HOH B:257 , HOH B:259 , HOH C:284
BINDING SITE FOR RESIDUE SO4 B 242
08
AC8
SOFTWARE
ALA B:10 , ARG B:14 , LYS B:213 , HOH B:304 , HOH B:305
BINDING SITE FOR RESIDUE SO4 B 243
09
AC9
SOFTWARE
VAL B:164 , TYR B:165 , ASP B:166 , LEU B:170 , HOH B:478
BINDING SITE FOR RESIDUE SO4 B 244
10
BC1
SOFTWARE
HIS B:136 , LYS B:139 , LYS B:213 , ACT B:241 , HOH B:275 , HOH B:279
BINDING SITE FOR RESIDUE SO4 B 245
11
BC2
SOFTWARE
SER B:103 , ALA B:104 , ASN B:105 , HIS B:111 , LYS B:149 , PHE B:237 , HOH B:341 , HOH B:351 , HOH B:443
BINDING SITE FOR RESIDUE SO4 B 246
12
BC3
SOFTWARE
THR B:162 , GLN B:177 , HOH B:283
BINDING SITE FOR RESIDUE SO4 B 247
13
BC4
SOFTWARE
HOH B:257 , ARG C:14 , SER C:212 , HOH C:260 , HOH C:262 , HOH C:284 , HOH C:542
BINDING SITE FOR RESIDUE SO4 C 241
14
BC5
SOFTWARE
THR B:81 , LYS B:139 , SER B:144 , GLY B:145 , THR B:146 , HOH B:277
BINDING SITE FOR RESIDUE GOL B 248
15
BC6
SOFTWARE
LYS C:139 , SER C:144 , GLY C:145 , THR C:146 , HOH C:310 , HOH C:486
BINDING SITE FOR RESIDUE SO4 C 242
16
BC7
SOFTWARE
LYS C:139 , VAL C:140 , ASP C:141 , SO4 C:244 , HOH C:339 , HOH C:598
BINDING SITE FOR RESIDUE SO4 C 243
17
BC8
SOFTWARE
HIS C:136 , LYS C:213 , SO4 C:243 , HOH C:313 , HOH C:339 , HOH C:688
BINDING SITE FOR RESIDUE SO4 C 244
18
BC9
SOFTWARE
ARG C:14 , LYS C:213 , HOH C:330 , HOH C:627
BINDING SITE FOR RESIDUE SO4 C 245
19
CC1
SOFTWARE
GLY C:9 , ALA C:10 , HOH C:338
BINDING SITE FOR RESIDUE SO4 C 246
20
CC2
SOFTWARE
SER D:59 , ASN D:60 , PRO D:61 , THR D:80 , HOH D:321
BINDING SITE FOR RESIDUE ACT D 241
21
CC3
SOFTWARE
LYS D:139 , SER D:144 , GLY D:145 , THR D:146 , HOH D:257 , HOH D:300
BINDING SITE FOR RESIDUE SO4 D 242
22
CC4
SOFTWARE
HIS D:136 , LYS D:139 , LYS D:213 , SO4 D:245 , HOH D:316 , HOH D:502
BINDING SITE FOR RESIDUE SO4 D 243
23
CC5
SOFTWARE
ARG D:14 , LYS D:213 , HOH D:342 , HOH D:343
BINDING SITE FOR RESIDUE SO4 D 244
24
CC6
SOFTWARE
LYS D:139 , VAL D:140 , ASP D:141 , SO4 D:243 , HOH D:502
BINDING SITE FOR RESIDUE SO4 D 245
25
CC7
SOFTWARE
GLY D:9 , ALA D:10 , HOH D:348
BINDING SITE FOR RESIDUE SO4 D 246
26
CC8
SOFTWARE
ARG B:226 , LYS B:230 , ASN D:97 , ASN D:232 , HOH D:271 , HOH D:621 , HOH D:689
BINDING SITE FOR RESIDUE SO4 D 247
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: DAPB (A:130-147,B:130-147,C:130-147,D:13...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAPB
PS01298
Dihydrodipicolinate reductase signature.
DAPB_STAAC
130-147
4
A:130-147
B:130-147
C:130-147
D:130-147
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (336 KB)
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