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3QXY
Biol. Unit 2
Info
Asym.Unit (156 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
HUMAN SETD6 IN COMPLEX WITH RELA LYS310
Authors
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Date
:
02 Mar 11 (Deposition) - 25 May 11 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Keywords
:
Epigenetics, Protein Lysine Methyltransferase, Transferase, Nf-Kb Network Via Methyllysine Signaling
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Structural Basis Of Setd6-Mediated Regulation Of The Nf-Kb Network Via Methyl-Lysine Signaling.
Nucleic Acids Res. V. 39 6380 2011
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: S-ADENOSYLMETHIONINE (SAMa)
2b: S-ADENOSYLMETHIONINE (SAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
SAM
1
Ligand/Ion
S-ADENOSYLMETHIONINE
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Sites
(9, 9)
Info
All Sites
1: AC8 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: BC6 (SOFTWARE)
6: BC7 (SOFTWARE)
7: BC8 (SOFTWARE)
8: BC9 (SOFTWARE)
9: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC8
SOFTWARE
HOH A:46 , LEU A:253 , VAL A:300 , HOH A:626 , HOH A:641 , SAM A:6734 , LYS B:441
BINDING SITE FOR RESIDUE EDO A 480
2
AC9
SOFTWARE
ASN A:440 , GLU A:442 , ARG B:68 , GLY B:74 , EDO B:477
BINDING SITE FOR RESIDUE EDO A 481
3
BC4
SOFTWARE
VAL B:72 , ALA B:73 , GLY B:74 , TYR B:75 , ALA B:222 , TYR B:223 , ASP B:248 , ILE B:249 , LEU B:250 , ASN B:251 , HIS B:252 , TYR B:285 , TYR B:297 , PHE B:299 , EDO B:477 , HOH B:544 , HOH B:555 , HOH B:604 , HOH B:646 , HOH B:659 , HOH B:672 , HOH B:716 , HOH B:723 , LYS Q:310
BINDING SITE FOR RESIDUE SAM B 6735
4
BC5
SOFTWARE
VAL B:300 , TYR B:444 , GLN B:452 , HOH B:581 , HOH B:649
BINDING SITE FOR RESIDUE EDO B 474
5
BC6
SOFTWARE
GLY B:170 , THR B:171 , GLY B:172 , GLU B:175 , GLN B:314
BINDING SITE FOR RESIDUE EDO B 475
6
BC7
SOFTWARE
LEU B:424 , TYR B:427 , ALA B:428 , THR B:429 , HOH B:622
BINDING SITE FOR RESIDUE EDO B 476
7
BC8
SOFTWARE
ASN A:440 , GLU A:442 , EDO A:481 , HOH B:63 , VAL B:72 , TRP B:449 , HOH B:604 , HOH B:623 , SAM B:6735
BINDING SITE FOR RESIDUE EDO B 477
8
BC9
SOFTWARE
SER B:120 , ASN B:183 , GLU B:187
BINDING SITE FOR RESIDUE EDO B 478
9
CC1
SOFTWARE
GLU B:154 , TRP B:159 , TRP B:449 , ARG B:450 , GLN B:453 , HOH B:610
BINDING SITE FOR RESIDUE EDO B 479
[
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_064590 (R185S, chain B, )
2: VAR_064591 (R206G, chain B, )
3: VAR_064592 (D340N, chain B, )
4: VAR_064593 (T426A, chain B, )
5: VAR_064594 (A445V, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064590
R
185
S
SETD6_HUMAN
Polymorphism
17852020
B
R
185
S
2
UniProt
VAR_064591
R
206
G
SETD6_HUMAN
Polymorphism
17852021
B
R
206
G
3
UniProt
VAR_064592
D
340
N
SETD6_HUMAN
Polymorphism
11865588
B
D
340
N
4
UniProt
VAR_064593
T
426
A
SETD6_HUMAN
Polymorphism
34965375
B
T
426
A
5
UniProt
VAR_064594
A
445
V
SETD6_HUMAN
Polymorphism
36085499
B
A
445
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SET (B:64-286)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
SETD6_HUMAN
60-286
1
-
B:64-286
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rubis_subs_bind_3qxyB01 (B:329-465)
1b: PFAM_Rubis_subs_bind_3qxyB02 (B:329-465)
2a: PFAM_SET_3qxyB03 (B:74-286)
2b: PFAM_SET_3qxyB04 (B:74-286)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Rubis-subs-bind]
(5)
Family
:
Rubis-subs-bind
(5)
Homo sapiens (Human)
(2)
1a
Rubis-subs-bind-3qxyB01
B:329-465
1b
Rubis-subs-bind-3qxyB02
B:329-465
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3qxyB03
B:74-286
2b
SET-3qxyB04
B:74-286
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Chain B
Chain Q
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (156 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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