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Getting 'Biological Unit' information from database.
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Getting 'PROSITE' information from database.
3QXY
Biol. Unit 1
Info
Asym.Unit (156 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
HUMAN SETD6 IN COMPLEX WITH RELA LYS310
Authors
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Date
:
02 Mar 11 (Deposition) - 25 May 11 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.09
Chains
:
Asym. Unit : A,B,P,Q
Biol. Unit 1: A,P (1x)
Biol. Unit 2: B,Q (1x)
Keywords
:
Epigenetics, Protein Lysine Methyltransferase, Transferase, Nf-Kb Network Via Methyllysine Signaling
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chang, D. Levy, J. R. Horton, J. Peng, X. Zhang, O. Gozani, X. Cheng
Structural Basis Of Setd6-Mediated Regulation Of The Nf-Kb Network Via Methyl-Lysine Signaling.
Nucleic Acids Res. V. 39 6380 2011
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: S-ADENOSYLMETHIONINE (SAMa)
2b: S-ADENOSYLMETHIONINE (SAMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
SAM
1
Ligand/Ion
S-ADENOSYLMETHIONINE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:73 , GLY A:74 , TYR A:75 , ALA A:222 , TYR A:223 , ASP A:248 , ILE A:249 , LEU A:250 , ASN A:251 , HIS A:252 , TYR A:285 , TYR A:297 , PHE A:299 , EDO A:480 , HOH A:533 , HOH A:568 , HOH A:580 , HOH A:606 , HOH A:652 , HOH A:668 , LYS P:310
BINDING SITE FOR RESIDUE SAM A 6734
02
AC2
SOFTWARE
LEU A:150 , GLY A:151 , ARG A:152 , LEU A:153 , PHE A:158 , GLN A:215
BINDING SITE FOR RESIDUE EDO A 474
03
AC3
SOFTWARE
SER A:120 , ASN A:183 , GLU A:187
BINDING SITE FOR RESIDUE EDO A 475
04
AC4
SOFTWARE
LEU A:424 , TYR A:427 , ALA A:428 , THR A:429 , HOH A:532 , HOH A:765
BINDING SITE FOR RESIDUE EDO A 476
05
AC5
SOFTWARE
THR A:368 , GLU A:396 , GLU A:397 , GLY A:398 , SER A:399
BINDING SITE FOR RESIDUE EDO A 477
06
AC6
SOFTWARE
VAL A:300 , TYR A:444 , TRP A:449 , GLN A:452 , HOH A:626 , HOH A:722
BINDING SITE FOR RESIDUE EDO A 478
07
AC7
SOFTWARE
ARG A:30 , LEU A:34 , LEU A:36 , HOH A:573
BINDING SITE FOR RESIDUE EDO A 479
08
AC8
SOFTWARE
HOH A:46 , LEU A:253 , VAL A:300 , HOH A:626 , HOH A:641 , SAM A:6734 , LYS B:441
BINDING SITE FOR RESIDUE EDO A 480
09
AC9
SOFTWARE
ASN A:440 , GLU A:442 , ARG B:68 , GLY B:74 , EDO B:477
BINDING SITE FOR RESIDUE EDO A 481
10
BC1
SOFTWARE
LEU A:362 , THR A:363 , GLU A:364 , GLU A:365 , GLU A:366 , HOH A:676
BINDING SITE FOR RESIDUE EDO A 482
11
BC2
SOFTWARE
GLN A:324 , ASN A:418 , LEU A:421 , LEU A:422 , GLN A:425 , HOH A:584 , HOH A:605
BINDING SITE FOR RESIDUE EDO A 483
12
BC3
SOFTWARE
GLU A:161 , ARG A:165 , GLU A:178 , HOH A:780
BINDING SITE FOR RESIDUE EDO A 484
13
BC8
SOFTWARE
ASN A:440 , GLU A:442 , EDO A:481 , HOH B:63 , VAL B:72 , TRP B:449 , HOH B:604 , HOH B:623 , SAM B:6735
BINDING SITE FOR RESIDUE EDO B 477
[
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_064590 (R185S, chain A, )
2: VAR_064591 (R206G, chain A, )
3: VAR_064592 (D340N, chain A, )
4: VAR_064593 (T426A, chain A, )
5: VAR_064594 (A445V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064590
R
185
S
SETD6_HUMAN
Polymorphism
17852020
A
R
185
S
2
UniProt
VAR_064591
R
206
G
SETD6_HUMAN
Polymorphism
17852021
A
R
206
G
3
UniProt
VAR_064592
D
340
N
SETD6_HUMAN
Polymorphism
11865588
A
D
340
N
4
UniProt
VAR_064593
T
426
A
SETD6_HUMAN
Polymorphism
34965375
A
T
426
A
5
UniProt
VAR_064594
A
445
V
SETD6_HUMAN
Polymorphism
36085499
A
A
445
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SET (A:64-286)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
SETD6_HUMAN
60-286
1
A:64-286
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Rubis_subs_bind_3qxyB01 (B:329-465)
1b: PFAM_Rubis_subs_bind_3qxyB02 (B:329-465)
2a: PFAM_SET_3qxyB03 (B:74-286)
2b: PFAM_SET_3qxyB04 (B:74-286)
View:
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Clans
(
)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Rubis-subs-bind]
(5)
Family
:
Rubis-subs-bind
(5)
Homo sapiens (Human)
(2)
1a
Rubis-subs-bind-3qxyB01
B:329-465
1b
Rubis-subs-bind-3qxyB02
B:329-465
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-3qxyB03
B:74-286
2b
SET-3qxyB04
B:74-286
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Atom Selection
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Nucleic
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Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (156 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
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