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Asym. Unit
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Asym.Unit (245 KB)
Biol.Unit 1 (237 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMAL GROWTH FACTOR RECEPTOR IN COMPLEX WITH AN ADNECTIN
Authors
:
S. Sheriff
Date
:
28 Feb 11 (Deposition) - 01 Feb 12 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cell Surface Receptor, Tyrosine Kinase, Glycoprotein, Adnectin, Antitumor, Drug, Engineered Binding Protein, Antibody Mimic, Signaling Protein, Protein Binding-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Ramamurthy, S. R. Krystek, A. Bush, A. Wei, S. L. Emanuel, R. Das Gupta, A. Janjua, L. Cheng, M. Murdock, B. Abramczyk, D. Cohen, Z. Lin, P. Morin, J. H. Davis, M. Dabritz, D. C. Mclaughlin, K. A. Russo, G. Chao, M. C. Wright, V. A. Jenny, L. J. Engle, E. Furfine, S. Sheriff
Structures Of Adnectin/Protein Complexes Reveal An Expanded Binding Footprint.
Structure V. 20 259 2012
[
close entry info
]
Hetero Components
(4, 19)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:28 , ASN A:32 , ASN A:33 , NAG A:1033 , FUC A:1037 , VAL B:10 , VAL B:11
BINDING SITE FOR RESIDUE NAG A 1032
02
AC2
SOFTWARE
NAG A:1032 , BMA A:1034 , MAN A:1036 , GLU B:9
BINDING SITE FOR RESIDUE NAG A 1033
03
AC3
SOFTWARE
ARG A:353 , GLY A:354 , SER A:356 , NAG A:1033 , MAN A:1035 , MAN A:1036
BINDING SITE FOR RESIDUE BMA A 1034
04
AC4
SOFTWARE
BMA A:1034 , ASP B:7 , LEU B:8
BINDING SITE FOR RESIDUE MAN A 1035
05
AC5
SOFTWARE
ASP A:355 , SER A:356 , THR A:360 , NAG A:1033 , BMA A:1034
BINDING SITE FOR RESIDUE MAN A 1036
06
AC6
SOFTWARE
NAG A:1032 , GLU B:9
BINDING SITE FOR RESIDUE FUC A 1037
07
AC7
SOFTWARE
SER A:324 , LEU A:325 , SER A:326 , ASN A:328 , THR A:330 , ASN A:331 , VAL A:350 , THR A:358 , THR A:360 , NAG A:1329
BINDING SITE FOR RESIDUE NAG A 1328
08
AC8
SOFTWARE
ASP A:323 , NAG A:1328 , BMA A:1330
BINDING SITE FOR RESIDUE NAG A 1329
09
AC9
SOFTWARE
ASP A:323 , NAG A:1329
BINDING SITE FOR RESIDUE BMA A 1330
10
BC1
SOFTWARE
LYS A:336 , ASN A:337 , NAG A:1338
BINDING SITE FOR RESIDUE NAG A 1337
11
BC2
SOFTWARE
NAG A:1337
BINDING SITE FOR RESIDUE NAG A 1338
12
BC3
SOFTWARE
ASN A:389 , ARG A:390
BINDING SITE FOR RESIDUE NAG A 1389
13
BC4
SOFTWARE
ASN A:420 , THR A:422 , ASN A:444
BINDING SITE FOR RESIDUE NAG A 1420
14
BC5
SOFTWARE
ASN A:504 , ASP A:513 , PRO A:607 , NAG A:1505 , FUC A:1509
BINDING SITE FOR RESIDUE NAG A 1504
15
BC6
SOFTWARE
ALA A:484 , TYR A:586 , ALA A:587 , ALA A:589 , THR A:605 , NAG A:1504 , BMA A:1506 , MAN A:1508
BINDING SITE FOR RESIDUE NAG A 1505
16
BC7
SOFTWARE
TYR A:561 , ALA A:587 , ASP A:588 , HIS A:591 , NAG A:1505 , MAN A:1507 , MAN A:1508
BINDING SITE FOR RESIDUE BMA A 1506
17
BC8
SOFTWARE
ALA A:587 , BMA A:1506
BINDING SITE FOR RESIDUE MAN A 1507
18
BC9
SOFTWARE
ALA A:589 , HIS A:591 , NAG A:1505 , BMA A:1506
BINDING SITE FOR RESIDUE MAN A 1508
19
CC1
SOFTWARE
NAG A:1504
BINDING SITE FOR RESIDUE FUC A 1509
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019293 (R74Q, chain A, )
2: VAR_019294 (P242R, chain A, )
3: VAR_072435 (G404D, chain A, )
4: VAR_019295 (R497K, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019293
R
98
Q
EGFR_HUMAN
Polymorphism
17289589
A
R
74
Q
2
UniProt
VAR_019294
P
266
R
EGFR_HUMAN
Polymorphism
17336639
A
P
242
R
3
UniProt
VAR_072435
G
428
D
EGFR_HUMAN
Disease (NISBD2)
---
A
G
404
D
4
UniProt
VAR_019295
R
521
K
EGFR_HUMAN
Polymorphism
2227983
A
R
497
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(16, 16)
Info
All Exons
Exon 1.1e (A:2-6)
Exon 1.5 (A:6-56)
Exon 1.6 (A:57-118)
Exon 1.7b (A:118-163)
Exon 1.8 (A:163-186)
Exon 1.9 (A:186-225)
Exon 1.10 (A:226-273)
Exon 1.11 (A:273-312)
Exon 1.12 (A:312-354)
Exon 1.13a (A:354-379)
Exon 1.14 (A:379-409)
Exon 1.15 (A:409-476)
Exon 1.16 (A:476-520)
Exon 1.17 (A:520-550)
Exon 1.18 (A:551-603)
Exon 1.21 (A:603-614)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1e
02: Boundary 1.1e/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7b
05: Boundary 1.7b/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13a
11: Boundary 1.13a/1.14
12: Boundary 1.14/1.15
13: Boundary 1.15/1.16
14: Boundary 1.16/1.17
15: Boundary 1.17/1.18
16: Boundary 1.18/1.21
17: Boundary 1.21/1.23
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000275493
1e
ENSE00001841347
chr7:
55086794-55087058
265
EGFR_HUMAN
1-30
30
1
A:2-6
5
1.5
ENST00000275493
5
ENSE00001715021
chr7:
55209979-55210130
152
EGFR_HUMAN
30-80
51
1
A:6-56
51
1.6
ENST00000275493
6
ENSE00001704157
chr7:
55210998-55211181
184
EGFR_HUMAN
81-142
62
1
A:57-118
62
1.7b
ENST00000275493
7b
ENSE00001798125
chr7:
55214299-55214433
135
EGFR_HUMAN
142-187
46
1
A:118-163
46
1.8
ENST00000275493
8
ENSE00001683983
chr7:
55218987-55219055
69
EGFR_HUMAN
187-210
24
1
A:163-186
24
1.9
ENST00000275493
9
ENSE00001652975
chr7:
55220239-55220357
119
EGFR_HUMAN
210-249
40
1
A:186-225
40
1.10
ENST00000275493
10
ENSE00001623732
chr7:
55221704-55221845
142
EGFR_HUMAN
250-297
48
1
A:226-273
48
1.11
ENST00000275493
11
ENSE00001751179
chr7:
55223523-55223639
117
EGFR_HUMAN
297-336
40
1
A:273-312
40
1.12
ENST00000275493
12
ENSE00001084929
chr7:
55224226-55224352
127
EGFR_HUMAN
336-378
43
1
A:312-354
43
1.13a
ENST00000275493
13a
ENSE00001084931
chr7:
55224452-55224525
74
EGFR_HUMAN
378-403
26
1
A:354-379
26
1.14
ENST00000275493
14
ENSE00001084926
chr7:
55225356-55225446
91
EGFR_HUMAN
403-433
31
1
A:379-409
31
1.15
ENST00000275493
15
ENSE00001084941
chr7:
55227832-55228031
200
EGFR_HUMAN
433-500
68
1
A:409-476
68
1.16
ENST00000275493
16
ENSE00001084939
chr7:
55229192-55229324
133
EGFR_HUMAN
500-544
45
1
A:476-520
45
1.17
ENST00000275493
17
ENSE00001084927
chr7:
55231426-55231516
91
EGFR_HUMAN
544-574
31
1
A:520-550
31
1.18
ENST00000275493
18
ENSE00001627115
chr7:
55232973-55233130
158
EGFR_HUMAN
575-627
53
1
A:551-603
53
1.21
ENST00000275493
21
ENSE00001768076
chr7:
55238868-55238906
39
EGFR_HUMAN
627-640
14
1
A:603-614
12
1.23
ENST00000275493
23
ENSE00001699330
chr7:
55240676-55240817
142
EGFR_HUMAN
640-687
48
0
-
-
1.24
ENST00000275493
24
ENSE00001778519
chr7:
55241614-55241736
123
EGFR_HUMAN
688-728
41
0
-
-
1.25
ENST00000275493
25
ENSE00001756460
chr7:
55242415-55242513
99
EGFR_HUMAN
729-761
33
0
-
-
1.26
ENST00000275493
26
ENSE00001601336
chr7:
55248986-55249171
186
EGFR_HUMAN
762-823
62
0
-
-
1.27
ENST00000275493
27
ENSE00001681524
chr7:
55259412-55259567
156
EGFR_HUMAN
824-875
52
0
-
-
1.28a
ENST00000275493
28a
ENSE00001631695
chr7:
55260459-55260534
76
EGFR_HUMAN
876-901
26
0
-
-
1.29
ENST00000275493
29
ENSE00001779947
chr7:
55266410-55266556
147
EGFR_HUMAN
901-950
50
0
-
-
1.30a
ENST00000275493
30a
ENSE00001790701
chr7:
55268009-55268106
98
EGFR_HUMAN
950-982
33
0
-
-
1.31
ENST00000275493
31
ENSE00001801208
chr7:
55268881-55269048
168
EGFR_HUMAN
983-1038
56
0
-
-
1.32
ENST00000275493
32
ENSE00001773562
chr7:
55269428-55269475
48
EGFR_HUMAN
1039-1054
16
0
-
-
1.33a
ENST00000275493
33a
ENSE00001795780
chr7:
55270210-55270318
109
EGFR_HUMAN
1055-1091
37
0
-
-
1.34b
ENST00000275493
34b
ENSE00001245887
chr7:
55272949-55279321
6373
EGFR_HUMAN
1091-1210
120
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3qwqb_ (B:)
View:
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
automated matches
(32)
Protein domain
:
automated matches
(32)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d3qwqb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (245 KB)
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