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3QWD
Asym. Unit
Info
Asym.Unit (867 KB)
Biol.Unit 1 (857 KB)
Biol.Unit 2 (433 KB)
Biol.Unit 3 (431 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CLPP FROM STAPHYLOCOCCUS AUREUS
Authors
:
S. R. Geiger, T. Boettcher, S. A. Sieber, P. Cramer
Date
:
28 Feb 11 (Deposition) - 18 May 11 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N (1x)
Biol. Unit 2: A,B,C,D,E,F,G (1x)
Biol. Unit 3: H,I,J,K,L,M,N (1x)
Keywords
:
Caseinolytic Protease, Clpp, Serin-Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. R. Geiger, T. Bottcher, S. A. Sieber, P. Cramer
A Conformational Switch Underlies Clpp Protease Function.
Angew. Chem. Int. Ed. Engl. V. 50 5749 2011
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:142
BINDING SITE FOR RESIDUE CL A 204
2
AC2
SOFTWARE
LEU B:126 , HIS B:142
BINDING SITE FOR RESIDUE CL B 204
3
AC3
SOFTWARE
LEU C:126 , HIS C:142
BINDING SITE FOR RESIDUE CL C 204
4
AC4
SOFTWARE
ARG D:157
BINDING SITE FOR RESIDUE CL D 204
5
AC5
SOFTWARE
LYS L:109 , ARG L:157
BINDING SITE FOR RESIDUE CL L 204
6
AC6
SOFTWARE
LEU L:126 , HIS L:142 , ARG L:147
BINDING SITE FOR RESIDUE CL L 205
7
AC7
SOFTWARE
LEU M:126 , HIS M:142 , ARG M:147
BINDING SITE FOR RESIDUE CL M 204
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 28)
Info
All PROSITE Patterns/Profiles
1: CLP_PROTEASE_SER (A:90-101,B:90-101,C:90-101,D:90-10...)
2: CLP_PROTEASE_HIS (A:112-125,B:112-125,C:112-125,D:11...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLP_PROTEASE_SER
PS00381
Endopeptidase Clp serine active site.
CLPP_STAA8
90-101
14
A:90-101
B:90-101
C:90-101
D:90-101
E:90-101
F:90-101
G:90-101
H:90-101
I:90-101
J:90-101
K:90-101
L:90-101
M:90-101
N:90-101
2
CLP_PROTEASE_HIS
PS00382
Endopeptidase Clp histidine active site.
CLPP_STAA8
112-125
14
A:112-125
B:112-125
C:112-125
D:112-125
E:112-125
F:112-125
G:112-125
H:112-125
I:112-125
J:112-125
K:112-125
L:112-125
M:112-125
N:112-125
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 14)
Info
All SCOP Domains
1a: SCOP_d3qwda_ (A:)
1b: SCOP_d3qwdb_ (B:)
1c: SCOP_d3qwdk_ (K:)
1d: SCOP_d3qwdl_ (L:)
1e: SCOP_d3qwdm_ (M:)
1f: SCOP_d3qwdn_ (N:)
1g: SCOP_d3qwdc_ (C:)
1h: SCOP_d3qwdd_ (D:)
1i: SCOP_d3qwde_ (E:)
1j: SCOP_d3qwdf_ (F:)
1k: SCOP_d3qwdg_ (G:)
1l: SCOP_d3qwdh_ (H:)
1m: SCOP_d3qwdi_ (I:)
1n: SCOP_d3qwdj_ (J:)
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Classes
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)
(
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Folds
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(
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Clp protease, ClpP subunit
(31)
Protein domain
:
automated matches
(16)
Staphylococcus aureus [TaxId: 93061]
(4)
1a
d3qwda_
A:
1b
d3qwdb_
B:
1c
d3qwdk_
K:
1d
d3qwdl_
L:
1e
d3qwdm_
M:
1f
d3qwdn_
N:
1g
d3qwdc_
C:
1h
d3qwdd_
D:
1i
d3qwde_
E:
1j
d3qwdf_
F:
1k
d3qwdg_
G:
1l
d3qwdh_
H:
1m
d3qwdi_
I:
1n
d3qwdj_
J:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 14)
Info
all PFAM domains
1a: PFAM_CLP_protease_3qwdN01 (N:16-193)
1b: PFAM_CLP_protease_3qwdN02 (N:16-193)
1c: PFAM_CLP_protease_3qwdN03 (N:16-193)
1d: PFAM_CLP_protease_3qwdN04 (N:16-193)
1e: PFAM_CLP_protease_3qwdN05 (N:16-193)
1f: PFAM_CLP_protease_3qwdN06 (N:16-193)
1g: PFAM_CLP_protease_3qwdN07 (N:16-193)
1h: PFAM_CLP_protease_3qwdN08 (N:16-193)
1i: PFAM_CLP_protease_3qwdN09 (N:16-193)
1j: PFAM_CLP_protease_3qwdN10 (N:16-193)
1k: PFAM_CLP_protease_3qwdN11 (N:16-193)
1l: PFAM_CLP_protease_3qwdN12 (N:16-193)
1m: PFAM_CLP_protease_3qwdN13 (N:16-193)
1n: PFAM_CLP_protease_3qwdN14 (N:16-193)
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Clans
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)
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(
)
(
)
Clan
:
ClpP_crotonase
(88)
Family
:
CLP_protease
(18)
Staphylococcus aureus (strain NCTC 8325)
(1)
1a
CLP_protease-3qwdN01
N:16-193
1b
CLP_protease-3qwdN02
N:16-193
1c
CLP_protease-3qwdN03
N:16-193
1d
CLP_protease-3qwdN04
N:16-193
1e
CLP_protease-3qwdN05
N:16-193
1f
CLP_protease-3qwdN06
N:16-193
1g
CLP_protease-3qwdN07
N:16-193
1h
CLP_protease-3qwdN08
N:16-193
1i
CLP_protease-3qwdN09
N:16-193
1j
CLP_protease-3qwdN10
N:16-193
1k
CLP_protease-3qwdN11
N:16-193
1l
CLP_protease-3qwdN12
N:16-193
1m
CLP_protease-3qwdN13
N:16-193
1n
CLP_protease-3qwdN14
N:16-193
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Asym.Unit (867 KB)
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