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3QVR
Biol. Unit 1
Info
Asym.Unit (120 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FOR SPACE GROUP P3121 AT 1.3 A RESOLUTION.
Authors
:
P. Kommoju, Z. Chen, R. C. Bruckner, F. S. Mathews, M. S. Jorns
Date
:
25 Feb 11 (Deposition) - 01 Jun 11 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. R. Kommoju, Z. W. Chen, R. C. Bruckner, F. S. Mathews, M. S. Jorns
Probing Oxygen Activation Sites In Two Flavoprotein Oxidase Using Chloride As An Oxygen Surrogate.
Biochemistry V. 50 5521 2011
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CHLORIDE ION (CLa)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:87 , ASN A:89 , ASN A:493 , TYR A:509 , NAG A:602 , HOH A:1146 , HOH A:1178 , HOH A:1239 , HOH A:1249 , HOH A:1256 , HOH A:1282 , HOH A:1914
BINDING SITE FOR RESIDUE NAG A 601
02
AC2
SOFTWARE
ARG A:337 , THR A:488 , GLY A:491 , ASP A:492 , NAG A:601 , BMA A:613 , HOH A:1146 , HOH A:1331 , HOH A:1454 , HOH A:1496 , HOH A:1860
BINDING SITE FOR RESIDUE NAG A 602
03
AC3
SOFTWARE
ARG A:337 , GLU A:487 , NAG A:602 , MAN A:615 , HOH A:1003
BINDING SITE FOR RESIDUE BMA A 613
04
AC4
SOFTWARE
PHE A:484 , GLY A:486 , GLU A:487 , BMA A:613 , MAN A:616 , HOH A:1124 , HOH A:1389 , HOH A:1584 , HOH A:1705 , HOH A:1795
BINDING SITE FOR RESIDUE MAN A 615
05
AC5
SOFTWARE
MAN A:615 , HOH A:1504 , HOH A:1584 , HOH A:1586 , HOH A:1894
BINDING SITE FOR RESIDUE MAN A 616
06
AC6
SOFTWARE
TYR A:159 , ASN A:161 , CYS A:164 , HOH A:1397 , HOH A:1413 , HOH A:1417 , HOH A:1531 , HOH A:1844 , HOH A:1927
BINDING SITE FOR RESIDUE NAG A 603
07
AC7
SOFTWARE
ASN A:355 , GLU A:363 , HIS A:366 , VAL A:404 , ASN A:407 , HOH A:1283 , HOH A:1374 , HOH A:1421 , HOH A:1748 , HOH A:1835 , HOH A:1882
BINDING SITE FOR RESIDUE NAG A 604
08
AC8
SOFTWARE
TYR A:139 , GLN A:142 , ASN A:388 , ALA A:391 , ILE A:394 , GLU A:527 , MET A:528 , ASP A:573 , HOH A:1243 , HOH A:1306 , HOH A:1427 , HOH A:1944
BINDING SITE FOR RESIDUE NAG A 605
09
AC9
SOFTWARE
GLY A:26 , GLY A:28 , LEU A:29 , THR A:30 , ILE A:49 , GLU A:50 , SER A:51 , TYR A:68 , HIS A:78 , ARG A:95 , GLY A:97 , ASN A:98 , GLY A:99 , GLY A:102 , SER A:103 , ASN A:107 , GLY A:108 , GLY A:109 , THR A:110 , TYR A:249 , VAL A:250 , ALA A:288 , ALA A:289 , VAL A:293 , TYR A:515 , ASP A:548 , GLY A:549 , HIS A:559 , VAL A:560 , MET A:561 , PHE A:564 , HOH A:1008 , HOH A:1012 , HOH A:1026 , HOH A:1027 , HOH A:1030 , HOH A:1057 , HOH A:1078 , HOH A:1097 , HOH A:1142
BINDING SITE FOR RESIDUE FAD A 600
10
BC1
SOFTWARE
HIS A:172 , GLU A:221 , HOH A:1546 , HOH A:1924
BINDING SITE FOR RESIDUE CL A 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GMC_OXRED_1 (A:97-120)
2: GMC_OXRED_2 (A:290-304)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GMC_OXRED_1
PS00623
GMC oxidoreductases signature 1.
GOX_ASPNG
119-142
1
A:97-120
2
GMC_OXRED_2
PS00624
GMC oxidoreductases signature 2.
GOX_ASPNG
312-326
1
A:290-304
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3qvra2 (A:325-520)
2a: SCOP_d3qvra1 (A:3-324,A:521-583)
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Classes
(
)
(
)
Folds
(
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(
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Superfamilies
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
GMC oxidoreductases
(30)
Protein domain
:
Glucose oxidase
(5)
Aspergillus niger [TaxId: 5061]
(4)
1a
d3qvra2
A:325-520
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Glucose oxidase
(5)
Aspergillus niger [TaxId: 5061]
(4)
2a
d3qvra1
A:3-324,A:521-583
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_GMC_oxred_N_3qvrA01 (A:20-331)
2a: PFAM_GMC_oxred_C_3qvrA02 (A:430-571)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
GMC_oxred_N
(8)
Aspergillus niger
(2)
1a
GMC_oxred_N-3qvrA01
A:20-331
Clan
:
no clan defined [family: GMC_oxred_C]
(22)
Family
:
GMC_oxred_C
(22)
Aspergillus niger
(2)
2a
GMC_oxred_C-3qvrA02
A:430-571
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]
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (120 KB)
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