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3QVE
Biol. Unit 1
Info
Asym.Unit (147 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN HMG BOX-CONTAINING PROTEIN 1, HBP1
Authors
:
A. Chaikuad, E. Krysztofinska, R. Cocking, M. Vollmar, W. W. Yue, T. Kro E. Ugochukwu, P. Filippakopoulos, F. Von Delft, C. H. Arrowsmith, J. A. M. Edwards, C. Bountra, U. Oppermann, Structural Genomics Conso
Date
:
25 Feb 11 (Deposition) - 16 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Sgc, Hmg Box Transcription Factor 1, Hbp1, Axh Domain, Structural Genomics Consortium, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, E. Krysztofinska, R. Cocking, M. Vollmar, W. W. Yue, T. Krojer, E. Ugochukwu, P. Filippakopoulos, F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. M. Edwards, C. Bountra, U. Oppermann, Structural Genomics Consortium
Crystal Structure Of Human Hmg Box-Containing Protein 1, Hbp1
To Be Published
[
close entry info
]
Hetero Components
(2, 13)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC8 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: EC1 (SOFTWARE)
16: EC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
HIS A:267 , HIS A:329 , ILE A:330 , HOH A:361
BINDING SITE FOR RESIDUE SO4 A 2
02
AC4
SOFTWARE
TYR A:313 , PRO A:314 , SER A:315 , HOH A:376
BINDING SITE FOR RESIDUE EDO A 343
03
AC8
SOFTWARE
EDO A:24 , ARG A:220 , TRP A:231 , LYS A:279 , GLU A:295 , HOH A:408 , HOH C:375
BINDING SITE FOR RESIDUE EDO A 7
04
AC9
SOFTWARE
SER A:266 , GLU A:268 , LYS A:279 , THR A:281 , THR A:293 , EDO C:9 , LEU C:291
BINDING SITE FOR RESIDUE EDO A 8
05
BC1
SOFTWARE
EDO A:8 , HOH A:86 , HIS A:224 , THR A:281 , THR A:293 , EDO C:17 , HIS C:224 , THR C:281 , THR C:293
BINDING SITE FOR RESIDUE EDO C 9
06
BC3
SOFTWARE
EDO A:23 , TRP C:231 , LYS C:279
BINDING SITE FOR RESIDUE EDO C 11
07
BC4
SOFTWARE
LYS A:225 , GLY A:226 , HIS A:254 , ASP A:289 , HOH A:393
BINDING SITE FOR RESIDUE EDO A 12
08
BC5
SOFTWARE
ASP A:260 , GLY A:261 , ASP A:283 , PRO A:284 , GLY A:285
BINDING SITE FOR RESIDUE EDO A 13
09
BC8
SOFTWARE
CYS A:325 , HOH A:436 , HOH B:398
BINDING SITE FOR RESIDUE EDO A 18
10
CC1
SOFTWARE
GLY A:226 , LYS A:229 , HOH A:390
BINDING SITE FOR RESIDUE EDO A 20
11
CC2
SOFTWARE
HOH A:30 , HOH A:195 , LYS A:225 , VAL A:287 , GLY A:290 , LEU A:291 , HIS C:267 , HOH C:368
BINDING SITE FOR RESIDUE EDO C 21
12
CC3
SOFTWARE
EDO A:23 , EDO A:24 , HIS A:224 , HOH A:409 , HOH C:344 , HOH C:423
BINDING SITE FOR RESIDUE EDO A 22
13
CC4
SOFTWARE
EDO A:22 , EDO A:24 , EDO C:11 , HIS C:224 , HOH C:423
BINDING SITE FOR RESIDUE EDO A 23
14
CC5
SOFTWARE
EDO A:7 , EDO A:22 , EDO A:23 , TRP A:231 , LYS A:279 , HOH A:409
BINDING SITE FOR RESIDUE EDO A 24
15
EC1
SOFTWARE
TYR A:303 , LYS A:305 , ASN A:306 , LYS A:307 , ASP A:341 , HOH A:385
BINDING SITE FOR RESIDUE EDO A 40
16
EC2
SOFTWARE
SER A:206 , TRP A:207
BINDING SITE FOR RESIDUE EDO A 41
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: AXH (A:207-342)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AXH
PS51148
AXH domain profile.
HBP1_HUMAN
203-345
1
A:207-342
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3qvea_ (A:)
1b: SCOP_d3qveb_ (B:)
1c: SCOP_d3qvec_ (C:)
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Protein Domains
(
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(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
AXH domain
(7)
Superfamily
:
AXH domain
(7)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3qvea_
A:
1b
d3qveb_
B:
1c
d3qvec_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_AXH_3qveC01 (C:215-340)
1b: PFAM_AXH_3qveC02 (C:215-340)
1c: PFAM_AXH_3qveC03 (C:215-340)
View:
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Clans
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(
)
Families
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: AXH]
(2)
Family
:
AXH
(2)
Homo sapiens (Human)
(1)
1a
AXH-3qveC01
C:215-340
1b
AXH-3qveC02
C:215-340
1c
AXH-3qveC03
C:215-340
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
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