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3QVE
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN HMG BOX-CONTAINING PROTEIN 1, HBP1
Authors
:
A. Chaikuad, E. Krysztofinska, R. Cocking, M. Vollmar, W. W. Yue, T. Kro E. Ugochukwu, P. Filippakopoulos, F. Von Delft, C. H. Arrowsmith, J. A. M. Edwards, C. Bountra, U. Oppermann, Structural Genomics Conso
Date
:
25 Feb 11 (Deposition) - 16 Mar 11 (Release) - 16 Mar 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Sgc, Hmg Box Transcription Factor 1, Hbp1, Axh Domain, Structural Genomics Consortium, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, E. Krysztofinska, R. Cocking, M. Vollmar, W. W. Yue, T. Krojer, E. Ugochukwu, P. Filippakopoulos, F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. M. Edwards, C. Bountra, U. Oppermann, Structural Genomics Consortium
Crystal Structure Of Human Hmg Box-Containing Protein 1, Hbp1
To Be Published
[
close entry info
]
Hetero Components
(2, 38)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
35
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH B:117 , HIS B:267 , HIS B:329 , ILE B:330 , HOH B:411
BINDING SITE FOR RESIDUE SO4 B 1
02
AC2
SOFTWARE
HIS A:267 , HIS A:329 , ILE A:330 , HOH A:361
BINDING SITE FOR RESIDUE SO4 A 2
03
AC3
SOFTWARE
HIS C:267 , HIS C:329 , ILE C:330 , HOH C:489
BINDING SITE FOR RESIDUE SO4 C 3
04
AC4
SOFTWARE
TYR A:313 , PRO A:314 , SER A:315 , HOH A:376
BINDING SITE FOR RESIDUE EDO A 343
05
AC5
SOFTWARE
EDO B:27 , ARG B:220 , TRP B:231 , LYS B:279 , GLU B:295 , HOH B:372 , HOH B:373 , HOH B:374
BINDING SITE FOR RESIDUE EDO B 3
06
AC6
SOFTWARE
ASP B:260 , GLY B:261 , LYS B:263 , PRO B:284
BINDING SITE FOR RESIDUE EDO B 4
07
AC7
SOFTWARE
EDO B:10 , GLU B:269 , SER B:270 , VAL B:271 , SER B:276
BINDING SITE FOR RESIDUE EDO B 6
08
AC8
SOFTWARE
EDO A:24 , ARG A:220 , TRP A:231 , LYS A:279 , GLU A:295 , HOH A:408 , HOH C:375
BINDING SITE FOR RESIDUE EDO A 7
09
AC9
SOFTWARE
SER A:266 , GLU A:268 , LYS A:279 , THR A:281 , THR A:293 , EDO C:9 , LEU C:291
BINDING SITE FOR RESIDUE EDO A 8
10
BC1
SOFTWARE
EDO A:8 , HOH A:86 , HIS A:224 , THR A:281 , THR A:293 , EDO C:17 , HIS C:224 , THR C:281 , THR C:293
BINDING SITE FOR RESIDUE EDO C 9
11
BC2
SOFTWARE
EDO B:6 , EDO B:28 , HIS B:224 , LYS B:225 , SER B:270 , VAL B:271 , HOH B:356
BINDING SITE FOR RESIDUE EDO B 10
12
BC3
SOFTWARE
EDO A:23 , TRP C:231 , LYS C:279
BINDING SITE FOR RESIDUE EDO C 11
13
BC4
SOFTWARE
LYS A:225 , GLY A:226 , HIS A:254 , ASP A:289 , HOH A:393
BINDING SITE FOR RESIDUE EDO A 12
14
BC5
SOFTWARE
ASP A:260 , GLY A:261 , ASP A:283 , PRO A:284 , GLY A:285
BINDING SITE FOR RESIDUE EDO A 13
15
BC6
SOFTWARE
GLY B:256 , TYR B:257 , HOH B:477
BINDING SITE FOR RESIDUE EDO B 16
16
BC7
SOFTWARE
EDO C:9 , SER C:266 , HIS C:267 , GLU C:268 , LYS C:279 , LEU C:280 , THR C:281 , HOH C:423
BINDING SITE FOR RESIDUE EDO C 17
17
BC8
SOFTWARE
CYS A:325 , HOH A:436 , HOH B:398
BINDING SITE FOR RESIDUE EDO A 18
18
BC9
SOFTWARE
EDO B:26 , HIS B:224 , THR B:281 , THR B:293
BINDING SITE FOR RESIDUE EDO B 19
19
CC1
SOFTWARE
GLY A:226 , LYS A:229 , HOH A:390
BINDING SITE FOR RESIDUE EDO A 20
20
CC2
SOFTWARE
HOH A:30 , HOH A:195 , LYS A:225 , VAL A:287 , GLY A:290 , LEU A:291 , HIS C:267 , HOH C:368
BINDING SITE FOR RESIDUE EDO C 21
21
CC3
SOFTWARE
EDO A:23 , EDO A:24 , HIS A:224 , HOH A:409 , HOH C:344 , HOH C:423
BINDING SITE FOR RESIDUE EDO A 22
22
CC4
SOFTWARE
EDO A:22 , EDO A:24 , EDO C:11 , HIS C:224 , HOH C:423
BINDING SITE FOR RESIDUE EDO A 23
23
CC5
SOFTWARE
EDO A:7 , EDO A:22 , EDO A:23 , TRP A:231 , LYS A:279 , HOH A:409
BINDING SITE FOR RESIDUE EDO A 24
24
CC6
SOFTWARE
TYR B:303 , LYS B:305 , ASN B:306 , LYS B:307 , ASP B:341 , HOH B:391
BINDING SITE FOR RESIDUE EDO B 25
25
CC7
SOFTWARE
EDO B:19 , HIS B:224 , SER B:266 , HIS B:267 , GLU B:268 , LYS B:279 , LEU B:280 , THR B:281 , HOH B:345
BINDING SITE FOR RESIDUE EDO B 26
26
CC8
SOFTWARE
EDO B:3 , EDO B:32 , TRP B:231 , LYS B:279 , HOH B:345
BINDING SITE FOR RESIDUE EDO B 27
27
CC9
SOFTWARE
EDO B:10 , GLY B:226 , LYS B:229
BINDING SITE FOR RESIDUE EDO B 28
28
DC1
SOFTWARE
HOH B:14 , LYS B:225 , HIS B:267 , VAL B:287 , LEU B:291 , HOH B:346 , HOH B:395
BINDING SITE FOR RESIDUE EDO B 30
29
DC2
SOFTWARE
SER B:272 , PHE B:273
BINDING SITE FOR RESIDUE EDO B 31
30
DC3
SOFTWARE
EDO B:27 , HIS B:224 , HOH B:345
BINDING SITE FOR RESIDUE EDO B 32
31
DC4
SOFTWARE
VAL B:319
BINDING SITE FOR RESIDUE EDO B 33
32
DC5
SOFTWARE
ASP C:260 , GLY C:261 , LYS C:263 , PRO C:284
BINDING SITE FOR RESIDUE EDO C 34
33
DC6
SOFTWARE
TYR C:303 , LYS C:305 , ASN C:306 , ASP C:341
BINDING SITE FOR RESIDUE EDO C 35
34
DC7
SOFTWARE
HOH B:130 , GLY B:256 , TYR B:257 , GLY B:258 , PRO B:284 , THR B:286 , ASP B:289
BINDING SITE FOR RESIDUE EDO B 37
35
DC8
SOFTWARE
GLY C:226 , LYS C:229
BINDING SITE FOR RESIDUE EDO C 38
36
DC9
SOFTWARE
SER B:206 , TRP B:207
BINDING SITE FOR RESIDUE EDO B 39
37
EC1
SOFTWARE
TYR A:303 , LYS A:305 , ASN A:306 , LYS A:307 , ASP A:341 , HOH A:385
BINDING SITE FOR RESIDUE EDO A 40
38
EC2
SOFTWARE
SER A:206 , TRP A:207
BINDING SITE FOR RESIDUE EDO A 41
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: AXH (A:207-342,B:207-342,C:207-342)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AXH
PS51148
AXH domain profile.
HBP1_HUMAN
203-345
3
A:207-342
B:207-342
C:207-342
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.8a (A:-1-218 (gaps) | B:-1-218 (gaps) ...)
Exon 1.9 (A:218-255 (gaps) | B:218-255 (gaps...)
Exon 1.10 (A:256-308 | B:256-308 | C:256-308)
Exon 1.11b (A:308-342 | B:308-342 | C:308-342)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7/1.8a
2: Boundary 1.8a/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11b
5: Boundary 1.11b/1.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000222574
1d
ENSE00001374924
chr7:
106809460-106809630
171
HBP1_HUMAN
-
0
0
-
-
1.5e
ENST00000222574
5e
ENSE00000881751
chr7:
106820324-106820507
184
HBP1_HUMAN
1-57
57
0
-
-
1.6e
ENST00000222574
6e
ENSE00000715119
chr7:
106822818-106823046
229
HBP1_HUMAN
57-133
77
0
-
-
1.7
ENST00000222574
7
ENSE00000715126
chr7:
106826246-106826387
142
HBP1_HUMAN
133-180
48
0
-
-
1.8a
ENST00000222574
8a
ENSE00000715132
chr7:
106826806-106826917
112
HBP1_HUMAN
181-218
38
3
A:-1-218 (gaps)
B:-1-218 (gaps)
C:0-218 (gaps)
25
25
27
1.9
ENST00000222574
9
ENSE00000715138
chr7:
106827014-106827126
113
HBP1_HUMAN
218-255
38
3
A:218-255 (gaps)
B:218-255 (gaps)
C:218-255 (gaps)
38
38
38
1.10
ENST00000222574
10
ENSE00000715143
chr7:
106829737-106829893
157
HBP1_HUMAN
256-308
53
3
A:256-308
B:256-308
C:256-308
53
53
53
1.11b
ENST00000222574
11b
ENSE00000715147
chr7:
106830618-106830762
145
HBP1_HUMAN
308-356
49
3
A:308-342
B:308-342
C:308-342
35
35
35
1.12b
ENST00000222574
12b
ENSE00000715151
chr7:
106836279-106836596
318
HBP1_HUMAN
356-462
107
0
-
-
1.13b
ENST00000222574
13b
ENSE00001432769
chr7:
106840605-106840746
142
HBP1_HUMAN
462-509
48
0
-
-
1.14e
ENST00000222574
14e
ENSE00001829379
chr7:
106841859-106842974
1116
HBP1_HUMAN
510-514
5
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3qvea_ (A:)
1b: SCOP_d3qveb_ (B:)
1c: SCOP_d3qvec_ (C:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
AXH domain
(7)
Superfamily
:
AXH domain
(7)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3qvea_
A:
1b
d3qveb_
B:
1c
d3qvec_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_AXH_3qveC01 (C:215-340)
1b: PFAM_AXH_3qveC02 (C:215-340)
1c: PFAM_AXH_3qveC03 (C:215-340)
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Clans
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Organisms
(
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(
)
Clan
:
no clan defined [family: AXH]
(2)
Family
:
AXH
(2)
Homo sapiens (Human)
(1)
1a
AXH-3qveC01
C:215-340
1b
AXH-3qveC02
C:215-340
1c
AXH-3qveC03
C:215-340
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