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3QV6
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (274 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA PYRUVATE KINASE(LMPYK)IN COMPLEX WITH ACID BLUE 80.
Authors
:
H. P. Morgan, D. S. Auld, I. W. Mcnae, M. W. Nowicki, P. A. M. Michels, L. A. Fothergill-Gilmore, M. D. Walkinshaw
Date
:
25 Feb 11 (Deposition) - 29 Jun 11 (Release) - 21 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,D
Biol. Unit 1: A,D (2x)
Keywords
:
Pyruvate Kinase, Glycolysis, Tim Barrel, Sugar Kinase, Adp/Atp Binding, Cytosol, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. P. Morgan, I. W. Mcnae, M. W. Nowicki, W. Zhong, P. A. Michels, D. S. Auld, L. A. Fothergill-Gilmore, M. D. Walkinshaw
The Trypanocidal Drug Suramin And Other Trypan Blue Mimetic Are Inhibitors Of Pyruvate Kinases And Bind To The Adenosin Site.
J. Biol. Chem. V. 286 31232 2011
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: 3-({4-[(2,4-DIMETHYL-5-SULFOPHENYL... (QV6a)
3b: 3-({4-[(2,4-DIMETHYL-5-SULFOPHENYL... (QV6b)
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Label:
No.
Name
Count
Type
Full Name
1
K
4
Ligand/Ion
POTASSIUM ION
2
PO4
2
Ligand/Ion
PHOSPHATE ION
3
QV6
2
Ligand/Ion
3-({4-[(2,4-DIMETHYL-5-SULFOPHENYL)AMINO]-9,10-DIOXO-9,10-DIHYDROANTHRACEN-1-YL}AMINO)-2,4,6-TRIMETHYLBENZENESULFONIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
QV6 A:500
BINDING SITE FOR RESIDUE QV6 A 499
2
AC2
SOFTWARE
THR A:26 , PRO A:29 , ARG A:49 , ASN A:51 , HIS A:54 , TYR A:59 , TYR A:304 , SER A:330 , GLY A:331 , ALA A:334 , LYS A:335 , QV6 A:499
BINDING SITE FOR RESIDUE QV6 A 500
3
AC3
SOFTWARE
ASN A:51 , SER A:53 , ASP A:83 , THR A:84 , SER A:211 , LYS A:238 , HOH A:553
BINDING SITE FOR RESIDUE K A 501
4
AC4
SOFTWARE
GLN A:354 , LEU A:357 , GLU A:359 , HOH A:537
BINDING SITE FOR RESIDUE K A 502
5
AC5
SOFTWARE
SER A:400 , ASN A:401 , THR A:402 , ARG A:404 , SER A:405 , ALA A:481
BINDING SITE FOR RESIDUE PO4 A 503
6
AC6
SOFTWARE
ASN D:51 , SER D:53 , ASP D:83 , THR D:84 , SER D:211 , LYS D:238 , HOH D:526
BINDING SITE FOR RESIDUE K D 499
7
AC7
SOFTWARE
GLN D:354 , LEU D:357 , GLU D:359 , HOH D:550
BINDING SITE FOR RESIDUE K D 500
8
AC8
SOFTWARE
SER D:400 , ASN D:401 , THR D:402 , GLY D:403 , ARG D:404 , SER D:405 , ASP D:482 , HOH D:548
BINDING SITE FOR RESIDUE PO4 D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRUVATE_KINASE (A:233-245,D:233-245)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRUVATE_KINASE
PS00110
Pyruvate kinase active site signature.
KPYK_LEIME
234-246
2
A:233-245
D:233-245
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 5)
Info
All SCOP Domains
1a: SCOP_d3qv6a2 (A:88-186)
2a: SCOP_d3qv6a3 (A:358-498)
2b: SCOP_d3qv6d2 (D:358-498)
3a: SCOP_d3qv6a1 (A:1-87,A:187-357)
3b: SCOP_d3qv6d1 (D:1-87,D:187-357)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PK beta-barrel domain-like
(31)
Superfamily
:
PK beta-barrel domain-like
(31)
Family
:
Pyruvate kinase beta-barrel domain
(28)
Protein domain
:
Pyruvate kinase (PK)
(28)
Trypanosome (Leishmania mexicana) [TaxId: 5665]
(11)
1a
d3qv6a2
A:88-186
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Pyruvate kinase C-terminal domain-like
(59)
Superfamily
:
PK C-terminal domain-like
(30)
Family
:
Pyruvate kinase, C-terminal domain
(28)
Protein domain
:
Pyruvate kinase, C-terminal domain
(28)
Trypanosome (Leishmania mexicana) [TaxId: 5665]
(11)
2a
d3qv6a3
A:358-498
2b
d3qv6d2
D:358-498
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Pyruvate kinase
(28)
Protein domain
:
Pyruvate kinase, N-terminal domain
(28)
Trypanosome (Leishmania mexicana) [TaxId: 5665]
(11)
3a
d3qv6a1
A:1-87,A:187-357
3b
d3qv6d1
D:1-87,D:187-357
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_PK_3qv6D01 (D:18-363)
1b: PFAM_PK_3qv6D02 (D:18-363)
2a: PFAM_PK_C_3qv6D03 (D:377-496)
2b: PFAM_PK_C_3qv6D04 (D:377-496)
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Clans
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)
Clan
:
PK_TIM
(63)
Family
:
PK
(17)
Leishmania mexicana
(6)
1a
PK-3qv6D01
D:18-363
1b
PK-3qv6D02
D:18-363
Clan
:
no clan defined [family: PK_C]
(19)
Family
:
PK_C
(19)
Leishmania mexicana
(6)
2a
PK_C-3qv6D03
D:377-496
2b
PK_C-3qv6D04
D:377-496
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Asymmetric Unit 1
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Asym.Unit (145 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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