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3QUL
Biol. Unit 1
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Asym.Unit (278 KB)
Biol.Unit 1 (73 KB)
Biol.Unit 2 (71 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (71 KB)
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Title
:
CRYSTAL STRUCTURES OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH LCMV-DERIVED GP33 ALTERED PEPTIDE LIGAND (Y4S)
Authors
:
E. Allerbring, A. D. Duru, H. Uchtenhagen, C. Madhurantakam, S. Grimm, M. B. Tomek, P. A. Mazumdar, A. Spetz, R. Friemann, T. Sandalova, M. Uhl P. Nygren, A. Achour
Date
:
24 Feb 11 (Deposition) - 21 Mar 12 (Release) - 03 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Murine Mhc, Lcmv, Receptor Binding, Beta2-Microglobulin, Immune System, T Cell Recognition, T Cell Receptor, Cell Surface
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. B. Allerbring, A. D. Duru, H. Uchtenhagen, C. Madhurantakam, M. B. Tomek, S. Grimm, P. A. Mazumdar, R. Friemann, M. Uhlin, T. Sandalova, P. A. Nygren, A. Achour
Unexpected T-Cell Recognition Of An Altered Peptide Ligand Is Driven By Reversed Thermodynamics.
Eur. J. Immunol. V. 42 2990 2012
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Hetero Components
(0, 0)
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS C:1 , ALA C:2 , VAL C:3 , SER C:4 , ASN C:5 , PHE C:6 , ALA C:7 , THR C:8 , MET C:9
BINDING SITE FOR CHAIN A OF H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B, )
4: VAR_B2MG_MOUSE_005 (D85D, chain B, )
5: VAR_B2MG_MOUSE_006 (D85V, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
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PROSITE Patterns/Profiles
(1, 2)
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1: IG_MHC (A:257-263)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
B:78-84
-
-
-
HA11_MOUSE
281-287
1
A:257-263
-
-
-
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (278 KB)
Header - Asym.Unit
Biol.Unit 1 (73 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
Biol.Unit 3 (72 KB)
Header - Biol.Unit 3
Biol.Unit 4 (71 KB)
Header - Biol.Unit 4
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