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3QU4
Asym. Unit
Info
Asym.Unit (314 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (43 KB)
Biol.Unit 5 (43 KB)
Biol.Unit 6 (43 KB)
Biol.Unit 7 (43 KB)
Biol.Unit 8 (43 KB)
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Title
:
CRYSTAL STRUCTURE OF PYROPHOSPHATASE FROM BACTEROIDES THETAIOTAOMICRON, ASP13ALA MUTANT
Authors
:
Y. Patskovsky, H. Huang, R. Toro, J. A. Gerlt, S. K. Burley, D. Dunaway-M S. C. Almo, New York Sgx Research Center For Structural Genomi (Nysgxrc), Enzyme Function Initiative (Efi)
Date
:
23 Feb 11 (Deposition) - 27 Apr 11 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Hydrolase, Pyrophosphatase, Magnesium Binding Site, New York Sgx Research Center For Structural Genomics, Nysgxrc, Enzyme Function Initiative, Efi, Psi-2, Protein Structure Initiative
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Huang, Y. Patskovsky, R. Toro, J. D. Farelli, C. Pandya, S. C. Almo, K. N. Allen, D. Dunaway-Mariano
Divergence Of Structure And Function In The Haloacid Dehalogenase Enzyme Superfamily: Bacteroides Thetaiotaomicron Bt2127 Is An Inorganic Pyrophosphatase.
Biochemistry V. 50 8937 2011
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CL
8
Ligand/Ion
CHLORIDE ION
3
MG
8
Ligand/Ion
MAGNESIUM ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:11 , ALA A:13 , GLU A:47 , ASN A:172 , HOH A:943 , HOH A:950
BINDING SITE FOR RESIDUE MG A 225
02
AC2
SOFTWARE
HIS A:23 , GLU A:47 , GLY A:48 , HOH A:263 , HOH A:376 , HOH A:950
BINDING SITE FOR RESIDUE ACT A 226
03
AC3
SOFTWARE
MET A:12 , ALA A:13 , SER A:19 , HOH A:915 , HOH A:1113
BINDING SITE FOR RESIDUE CL A 227
04
AC4
SOFTWARE
ASP B:11 , ALA B:13 , GLU B:47 , ASN B:172 , HOH B:246 , HOH B:974
BINDING SITE FOR RESIDUE MG B 225
05
AC5
SOFTWARE
MET B:12 , ALA B:13 , SER B:19 , HOH B:447 , HOH B:486
BINDING SITE FOR RESIDUE CL B 226
06
AC6
SOFTWARE
ASP C:11 , ALA C:13 , GLU C:47 , ASN C:172 , HOH C:583 , HOH C:922
BINDING SITE FOR RESIDUE MG C 225
07
AC7
SOFTWARE
MET C:12 , ALA C:13 , PHE C:17 , SER C:19 , HOH C:256 , HOH C:1003
BINDING SITE FOR RESIDUE CL C 226
08
AC8
SOFTWARE
ASP D:11 , ALA D:13 , GLU D:47 , ASN D:172 , HOH D:457 , HOH D:925
BINDING SITE FOR RESIDUE MG D 225
09
AC9
SOFTWARE
HIS D:23 , GLY D:48 , HOH D:319 , HOH D:925
BINDING SITE FOR RESIDUE ACT D 226
10
BC1
SOFTWARE
MET D:12 , ALA D:13 , PHE D:17 , SER D:19 , HOH D:459 , HOH D:984
BINDING SITE FOR RESIDUE CL D 227
11
BC2
SOFTWARE
ASP E:11 , ALA E:13 , GLU E:47 , ASN E:172 , HOH E:355 , HOH E:734
BINDING SITE FOR RESIDUE MG E 225
12
BC3
SOFTWARE
MET E:12 , ALA E:13 , PHE E:17 , SER E:19 , HOH E:243
BINDING SITE FOR RESIDUE CL E 226
13
BC4
SOFTWARE
ASP F:11 , ALA F:13 , GLU F:47 , ASN F:172 , HOH F:235 , HOH F:772
BINDING SITE FOR RESIDUE MG F 225
14
BC5
SOFTWARE
ALA F:13 , SER F:19 , HOH F:474 , HOH F:874
BINDING SITE FOR RESIDUE CL F 226
15
BC6
SOFTWARE
ASP G:11 , ALA G:13 , GLU G:47 , ASN G:172 , HOH G:827 , HOH G:856
BINDING SITE FOR RESIDUE MG G 225
16
BC7
SOFTWARE
MET G:12 , SER G:19 , HOH G:348 , HOH G:478
BINDING SITE FOR RESIDUE CL G 226
17
BC8
SOFTWARE
ASP H:11 , ALA H:13 , GLU H:47 , ASN H:172 , HOH H:252 , HOH H:815
BINDING SITE FOR RESIDUE MG H 225
18
BC9
SOFTWARE
HIS H:23 , GLU H:47 , GLY H:48 , HOH H:574 , HOH H:815
BINDING SITE FOR RESIDUE ACT H 226
19
CC1
SOFTWARE
MET H:12 , ALA H:13 , SER H:19 , HOH H:262
BINDING SITE FOR RESIDUE CL H 227
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3qu4a_ (A:)
1b: SCOP_d3qu4b_ (B:)
1c: SCOP_d3qu4c_ (C:)
1d: SCOP_d3qu4d_ (D:)
1e: SCOP_d3qu4e_ (E:)
1f: SCOP_d3qu4f_ (F:)
1g: SCOP_d3qu4g_ (G:)
1h: SCOP_d3qu4h_ (H:)
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)
(
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(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
automated matches
(99)
Protein domain
:
automated matches
(99)
Bacteroides thetaiotaomicron [TaxId: 818]
(21)
1a
d3qu4a_
A:
1b
d3qu4b_
B:
1c
d3qu4c_
C:
1d
d3qu4d_
D:
1e
d3qu4e_
E:
1f
d3qu4f_
F:
1g
d3qu4g_
G:
1h
d3qu4h_
H:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_HAD_2_3qu4H01 (H:8-190)
1b: PFAM_HAD_2_3qu4H02 (H:8-190)
1c: PFAM_HAD_2_3qu4H03 (H:8-190)
1d: PFAM_HAD_2_3qu4H04 (H:8-190)
1e: PFAM_HAD_2_3qu4H05 (H:8-190)
1f: PFAM_HAD_2_3qu4H06 (H:8-190)
1g: PFAM_HAD_2_3qu4H07 (H:8-190)
1h: PFAM_HAD_2_3qu4H08 (H:8-190)
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Clans
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Organisms
(
)
(
)
Clan
:
HAD
(186)
Family
:
HAD_2
(33)
Bacteroides thetaiotaomicron
(14)
1a
HAD_2-3qu4H01
H:8-190
1b
HAD_2-3qu4H02
H:8-190
1c
HAD_2-3qu4H03
H:8-190
1d
HAD_2-3qu4H04
H:8-190
1e
HAD_2-3qu4H05
H:8-190
1f
HAD_2-3qu4H06
H:8-190
1g
HAD_2-3qu4H07
H:8-190
1h
HAD_2-3qu4H08
H:8-190
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Asymmetric Unit 1
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