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3QT2
Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (180 KB)
Biol.Unit 2 (180 KB)
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(1)
Title
:
STRUCTURE OF A CYTOKINE LIGAND-RECEPTOR COMPLEX
Authors
:
T. D. Mueller, E. Patino, A. Kotzsch, S. Saremba, J. Nickel, W. Schmitz,
Date
:
22 Feb 11 (Deposition) - 01 Feb 12 (Release) - 01 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: B,E,F (1x)
Keywords
:
Cytokine Type I Receptor Fold, Fibronectin Type Iii Modules, Four- Helical Bundle, Cytokine, Ligand-Receptor Complex, Membrane, Protein Binding-Immune System Complex
(Keyword Search:
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)
Reference
:
E. Patino, A. Kotzsch, S. Saremba, J. Nickel, W. Schmitz, W. Sebald, T. D. Mueller
Structure Analysis Of The Il-5 Ligand-Receptor Complex Reveals A Wrench-Like Architecture For Il-5Ralpha.
Structure V. 19 1864 2011
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
6
Ligand/Ion
BETA-D-GLUCOSE
2
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:194
BINDING SITE FOR RESIDUE BGC A 316
2
AC2
SOFTWARE
ASN A:50 , SER A:77 , TRP A:93 , SER A:95
BINDING SITE FOR RESIDUE BGC A 317
3
AC3
SOFTWARE
TRP A:177
BINDING SITE FOR RESIDUE BGC A 318
4
AC4
SOFTWARE
TYR A:152 , GLU A:161 , SER E:19
BINDING SITE FOR RESIDUE MPD A 319
5
AC5
SOFTWARE
TRP B:177
BINDING SITE FOR RESIDUE BGC B 316
6
AC6
SOFTWARE
LYS B:48 , ASN B:50 , SER B:77 , HOH B:329
BINDING SITE FOR RESIDUE BGC B 317
7
AC7
SOFTWARE
LEU B:23 , TYR B:152
BINDING SITE FOR RESIDUE BGC B 318
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020654 (I109V, chain A/B, )
2: VAR_020655 (V242A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020654
I
129
V
IL5RA_HUMAN
Polymorphism
2290610
A/B
I
109
V
2
UniProt
VAR_020655
V
262
A
IL5RA_HUMAN
Polymorphism
17879690
A/B
V
242
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: FN3 (A:12-103,B:12-103|A:221-312,B:221-...)
2: HEMATOPO_REC_S_F2 (A:133-162,B:133-162)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
IL5RA_HUMAN
32-123
241-334
4
A:12-103
B:12-103
A:221-312
B:221-312
2
HEMATOPO_REC_S_F2
PS01356
Short hematopoietin receptor family 2 signature.
IL5RA_HUMAN
153-182
2
A:133-162
B:133-162
[
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Exons
(12, 32)
Info
All Exons
Exon 1.2b (C:3-29 | D:6-29 | E:4-29 | F:6-29)
Exon 1.2c (C:30-40 | D:30-40 | E:30-40 | F:30...)
Exon 1.3b (C:41-83 | D:41-83 | E:41-83 | F:41...)
Exon 1.4 (C:84-112 | D:84-114 | E:84-112 | F...)
Exon 2.5 (A:7-8 | B:8-8)
Exon 2.6 (A:8-56 | B:8-56)
Exon 2.7b (A:57-103 | B:57-103)
Exon 2.8 (A:103-154 | B:103-154)
Exon 2.9b (A:154-217 | B:154-217)
Exon 2.10 (A:217-265 | B:217-265)
Exon 2.11a (A:266-312 | B:266-312)
Exon 2.13 (A:312-313 (gaps) | B:312-314 (gaps...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2b
02: Boundary 1.2b/1.2c
03: Boundary 1.2c/1.3b
04: Boundary 1.3b/1.4
05: Boundary 1.4/-
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7b
09: Boundary 2.7b/2.8
10: Boundary 2.8/2.9b
11: Boundary 2.9b/2.10
12: Boundary 2.10/2.11a
13: Boundary 2.11a/2.13
14: Boundary 2.13/2.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000231454
2b
ENSE00000854388
chr5:
131879214-131879027
188
IL5_HUMAN
1-48
48
4
C:3-29
D:6-29
E:4-29
F:6-29
27
24
26
24
1.2c
ENST00000231454
2c
ENSE00000763102
chr5:
131878818-131878786
33
IL5_HUMAN
49-59
11
4
C:30-40
D:30-40
E:30-40
F:30-40
11
11
11
11
1.3b
ENST00000231454
3b
ENSE00000763103
chr5:
131877835-131877707
129
IL5_HUMAN
60-102
43
4
C:41-83
D:41-83
E:41-83
F:41-83
43
43
43
43
1.4
ENST00000231454
4
ENSE00000854387
chr5:
131877601-131877136
466
IL5_HUMAN
103-134
32
4
C:84-112
D:84-114
E:84-112
F:84-114
29
31
29
31
2.2f
ENST00000256452
2f
ENSE00001898297
chr3:
3151664-3151629
36
IL5RA_HUMAN
-
0
0
-
-
2.3b
ENST00000256452
3b
ENSE00000997127
chr3:
3150375-3150234
142
IL5RA_HUMAN
-
0
0
-
-
2.4
ENST00000256452
4
ENSE00001322495
chr3:
3147220-3147152
69
IL5RA_HUMAN
-
0
0
-
-
2.5
ENST00000256452
5
ENSE00002175535
chr3:
3146671-3146587
85
IL5RA_HUMAN
1-28
28
2
A:7-8
B:8-8
2
1
2.6
ENST00000256452
6
ENSE00001624596
chr3:
3144504-3144359
146
IL5RA_HUMAN
28-76
49
2
A:8-56
B:8-56
49
49
2.7b
ENST00000256452
7b
ENSE00001730405
chr3:
3143514-3143376
139
IL5RA_HUMAN
77-123
47
2
A:57-103
B:57-103
47
47
2.8
ENST00000256452
8
ENSE00001634426
chr3:
3139974-3139821
154
IL5RA_HUMAN
123-174
52
2
A:103-154
B:103-154
52
52
2.9b
ENST00000256452
9b
ENSE00001733184
chr3:
3139741-3139554
188
IL5RA_HUMAN
174-237
64
2
A:154-217
B:154-217
64
64
2.10
ENST00000256452
10
ENSE00001619473
chr3:
3137128-3136983
146
IL5RA_HUMAN
237-285
49
2
A:217-265
B:217-265
49
49
2.11a
ENST00000256452
11a
ENSE00001657506
chr3:
3134046-3133908
139
IL5RA_HUMAN
286-332
47
2
A:266-312
B:266-312
47
47
2.13
ENST00000256452
13
ENSE00000912359
chr3:
3118311-3118215
97
IL5RA_HUMAN
332-364
33
2
A:312-313 (gaps)
B:312-314 (gaps)
12
13
2.14
ENST00000256452
14
ENSE00000912357
chr3:
3116550-3116466
85
IL5RA_HUMAN
364-392
29
0
-
-
2.16a
ENST00000256452
16a
ENSE00001908764
chr3:
3111995-3111421
575
IL5RA_HUMAN
393-420
28
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3qt2c_ (C:)
1b: SCOP_d3qt2d_ (D:)
1c: SCOP_d3qt2e_ (E:)
1d: SCOP_d3qt2f_ (F:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3qt2c_
C:
1b
d3qt2d_
D:
1c
d3qt2e_
E:
1d
d3qt2f_
F:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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