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3QSM
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE FOR THE MSOX.CHLORIDE BINARY COMPLEX
Authors
:
P. Kommoju, Z. Chen, R. C. Bruckner, F. S. Mathews, M. S. Jorns
Date
:
21 Feb 11 (Deposition) - 01 Jun 11 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Flavoprotein, Oxidase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. R. Kommoju, Z. W. Chen, R. C. Bruckner, F. S. Mathews, M. S. Jorns
Probing Oxygen Activation Sites In Two Flavoprotein Oxidase Using Chloride As An Oxygen Surrogate.
Biochemistry V. 50 5521 2011
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:10 , GLY A:12 , SER A:13 , MET A:14 , VAL A:32 , ASP A:33 , ALA A:34 , PHE A:35 , HIS A:39 , GLY A:42 , SER A:43 , HIS A:44 , ARG A:49 , ILE A:50 , ARG A:172 , VAL A:173 , SER A:200 , MET A:201 , GLY A:202 , TRP A:204 , LEU A:208 , VAL A:225 , TYR A:254 , CYS A:315 , MET A:316 , TYR A:317 , PHE A:342 , GLY A:344 , HIS A:345 , GLY A:346 , PHE A:347 , LYS A:348 , CL A:403 , CL A:404 , HOH A:1017 , HOH A:1024 , HOH A:1031 , HOH A:1038 , HOH A:1064
BINDING SITE FOR RESIDUE FAD A 400
2
AC2
SOFTWARE
GLY B:10 , GLY B:12 , SER B:13 , MET B:14 , VAL B:32 , ASP B:33 , ALA B:34 , PHE B:35 , HIS B:39 , GLY B:42 , SER B:43 , HIS B:44 , ARG B:49 , ILE B:50 , THR B:171 , ARG B:172 , VAL B:173 , SER B:200 , MET B:201 , GLY B:202 , TRP B:204 , LEU B:208 , VAL B:225 , TYR B:254 , CYS B:315 , MET B:316 , TYR B:317 , PHE B:342 , GLY B:344 , HIS B:345 , GLY B:346 , PHE B:347 , LYS B:348 , CL B:403 , CL B:404 , HOH B:1011 , HOH B:1021 , HOH B:1026 , HOH B:1080 , HOH B:1123 , HOH B:1229
BINDING SITE FOR RESIDUE FAD B 400
3
AC3
SOFTWARE
TYR A:317 , THR A:318 , SER A:343 , GLY A:344 , FAD A:400 , HOH A:1045
BINDING SITE FOR RESIDUE CL A 403
4
AC4
SOFTWARE
HIS A:45 , ARG A:49 , VAL A:225 , LYS A:265 , FAD A:400 , HOH A:1038
BINDING SITE FOR RESIDUE CL A 404
5
AC5
SOFTWARE
TYR B:317 , THR B:318 , GLY B:344 , FAD B:400 , HOH B:1008
BINDING SITE FOR RESIDUE CL B 403
6
AC6
SOFTWARE
HIS B:45 , GLY B:46 , ARG B:49 , VAL B:225 , LYS B:265 , FAD B:400
BINDING SITE FOR RESIDUE CL B 404
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3qsma2 (A:218-321)
1b: SCOP_d3qsmb2 (B:218-321)
2a: SCOP_d3qsma1 (A:1-217,A:322-387)
2b: SCOP_d3qsmb1 (B:1-217,B:322-387)
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Protein Domains
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)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
1a
d3qsma2
A:218-321
1b
d3qsmb2
B:218-321
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Sarcosine oxidase
(16)
Bacillus sp., strain b0618 [TaxId: 1409]
(16)
2a
d3qsma1
A:1-217,A:322-387
2b
d3qsmb1
B:1-217,B:322-387
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CATH Domains
(0, 0)
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_DAO_3qsmB01 (B:5-360)
1b: PFAM_DAO_3qsmB02 (B:5-360)
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Clan
:
NADP_Rossmann
(1239)
Family
:
DAO
(25)
Bacillus sp. (strain B-0618)
(9)
1a
DAO-3qsmB01
B:5-360
1b
DAO-3qsmB02
B:5-360
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Asym.Unit (142 KB)
Header - Asym.Unit
Biol.Unit 1 (70 KB)
Header - Biol.Unit 1
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