PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3QS9
Biol. Unit 1
Info
Asym.Unit (257 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (121 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF A HUMAN FLT3 LIGAND-RECEPTOR TERNARY COMPLEX
Authors
:
K. Verstraete, S. N. Savvides
Date
:
20 Feb 11 (Deposition) - 16 Mar 11 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
7.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D,G,H (1x)
Biol. Unit 2: A,B,E,F (1x)
Keywords
:
Immunoglobulin-Like Domain, Four-Helical Bundle Cytokine, Hematopoietic Cytokine-Receptor Complex, Cell Surface, Extracellular Complex, Receptor Tyrosine Kinase, Cytokine-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Verstraete, G. Vandriessche, M. Januar, J. Elegheert, A. V. Shkumatov, A. Desfosses, K. Van Craenenbroeck, D. I. Svergun, I. Gutsche, B. Vergauwen, S. N. Savvides
Structural Insights Into The Extracellular Assembly Of The Hematopoietic Flt3 Signaling Complex.
Blood V. 118 60 2011
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_042069 (V158A, chain G/H, )
2: VAR_054149 (V194M, chain G/H, )
3: VAR_034678 (T227M, chain G/H, )
4: VAR_042070 (D324N, chain G/H, )
5: VAR_042071 (D358V, chain G/H, )
6: VAR_061291 (I417L, chain G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042069
V
158
A
FLT3_HUMAN
Polymorphism
56321896
G/H
V
158
A
2
UniProt
VAR_054149
V
194
M
FLT3_HUMAN
Polymorphism
---
G/H
V
194
M
3
UniProt
VAR_034678
T
227
M
FLT3_HUMAN
Polymorphism
1933437
G/H
T
227
M
4
UniProt
VAR_042070
D
324
N
FLT3_HUMAN
Polymorphism
35602083
G/H
D
324
N
5
UniProt
VAR_042071
D
358
V
FLT3_HUMAN
Polymorphism
34172843
G/H
D
358
V
6
UniProt
VAR_061291
I
417
L
FLT3_HUMAN
Polymorphism
56090538
G/H
I
417
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Flt3_lig_3qs9D01 (D:3-132)
1b: PFAM_Flt3_lig_3qs9D02 (D:3-132)
1c: PFAM_Flt3_lig_3qs9D03 (D:3-132)
1d: PFAM_Flt3_lig_3qs9D04 (D:3-132)
2a: PFAM_ig_3qs9H01 (H:265-332)
2b: PFAM_ig_3qs9H02 (H:265-332)
2c: PFAM_ig_3qs9H03 (H:265-332)
2d: PFAM_ig_3qs9H04 (H:265-332)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
4H_Cytokine
(48)
Family
:
Flt3_lig
(2)
Homo sapiens (Human)
(2)
1a
Flt3_lig-3qs9D01
D:3-132
1b
Flt3_lig-3qs9D02
D:3-132
1c
Flt3_lig-3qs9D03
D:3-132
1d
Flt3_lig-3qs9D04
D:3-132
Clan
:
Ig
(577)
Family
:
ig
(14)
Homo sapiens (Human)
(11)
2a
ig-3qs9H01
H:265-332
2b
ig-3qs9H02
H:265-332
2c
ig-3qs9H03
H:265-332
2d
ig-3qs9H04
H:265-332
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (257 KB)
Header - Asym.Unit
Biol.Unit 1 (129 KB)
Header - Biol.Unit 1
Biol.Unit 2 (121 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3QS9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help