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3QS9
Asym. Unit
Info
Asym.Unit (257 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (121 KB)
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Title
:
CRYSTAL STRUCTURE OF A HUMAN FLT3 LIGAND-RECEPTOR TERNARY COMPLEX
Authors
:
K. Verstraete, S. N. Savvides
Date
:
20 Feb 11 (Deposition) - 16 Mar 11 (Release) - 20 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
7.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D,G,H (1x)
Biol. Unit 2: A,B,E,F (1x)
Keywords
:
Immunoglobulin-Like Domain, Four-Helical Bundle Cytokine, Hematopoietic Cytokine-Receptor Complex, Cell Surface, Extracellular Complex, Receptor Tyrosine Kinase, Cytokine-Signaling Protein Complex
(Keyword Search:
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)
Reference
:
K. Verstraete, G. Vandriessche, M. Januar, J. Elegheert, A. V. Shkumatov, A. Desfosses, K. Van Craenenbroeck, D. I. Svergun, I. Gutsche, B. Vergauwen, S. N. Savvides
Structural Insights Into The Extracellular Assembly Of The Hematopoietic Flt3 Signaling Complex.
Blood V. 118 60 2011
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(6, 23)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042069 (V158A, chain E/G/H, )
2: VAR_054149 (V194M, chain E/F/G/H, )
3: VAR_034678 (T227M, chain E/F/G/H, )
4: VAR_042070 (D324N, chain E/F/G/H, )
5: VAR_042071 (D358V, chain E/F/G/H, )
6: VAR_061291 (I417L, chain E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042069
V
158
A
FLT3_HUMAN
Polymorphism
56321896
E/G/H
V
158
A
2
UniProt
VAR_054149
V
194
M
FLT3_HUMAN
Polymorphism
---
E/F/G/H
V
194
M
3
UniProt
VAR_034678
T
227
M
FLT3_HUMAN
Polymorphism
1933437
E/F/G/H
T
227
M
4
UniProt
VAR_042070
D
324
N
FLT3_HUMAN
Polymorphism
35602083
E/F/G/H
D
324
N
5
UniProt
VAR_042071
D
358
V
FLT3_HUMAN
Polymorphism
34172843
E/F/G/H
D
358
V
6
UniProt
VAR_061291
I
417
L
FLT3_HUMAN
Polymorphism
56090538
E/F/G/H
I
417
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(10, 38)
Info
All Exons
Exon 1.3 (E:79-118 | - | G:79-118 | H:79-118)
Exon 1.4 (E:124-161 (gaps) | - | G:124-161 (...)
Exon 1.5 (E:167-199 | F:167-199 | G:167-199 ...)
Exon 1.6 (E:213-248 | F:213-248 | G:213-248 ...)
Exon 1.7 (E:248-294 | F:248-294 | G:248-294 ...)
Exon 1.8 (E:295-345 | F:295-345 | G:295-345 ...)
Exon 1.9 (E:348-402 | F:348-402 | G:348-402 ...)
Exon 1.10 (E:402-437 (gaps) | F:402-437 (gaps...)
Exon 1.11 (E:437-468 (gaps) | F:437-468 (gaps...)
Exon 1.12 (E:474-529 (gaps) | F:474-529 (gaps...)
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000241453
1
ENSE00001351959
chr13:
28674729-28674605
125
FLT3_HUMAN
1-15
15
0
-
-
1.2
ENST00000241453
2
ENSE00000906615
chr13:
28644749-28644628
122
FLT3_HUMAN
15-55
41
0
-
-
1.3
ENST00000241453
3
ENSE00000906614
chr13:
28636206-28636004
203
FLT3_HUMAN
56-123
68
3
E:79-118
-
G:79-118
H:79-118
40
-
40
40
1.4
ENST00000241453
4
ENSE00000906613
chr13:
28631599-28631484
116
FLT3_HUMAN
123-162
40
3
E:124-161 (gaps)
-
G:124-161 (gaps)
H:124-161 (gaps)
38
-
38
38
1.5
ENST00000241453
5
ENSE00000906612
chr13:
28626811-28626682
130
FLT3_HUMAN
162-205
44
4
E:167-199
F:167-199
G:167-199
H:167-199
33
33
33
33
1.6
ENST00000241453
6
ENSE00000906611
chr13:
28624359-28624232
128
FLT3_HUMAN
205-248
44
4
E:213-248
F:213-248
G:213-248
H:213-248
36
36
36
36
1.7
ENST00000241453
7
ENSE00000906610
chr13:
28623911-28623772
140
FLT3_HUMAN
248-294
47
4
E:248-294
F:248-294
G:248-294
H:248-294
47
47
47
47
1.8
ENST00000241453
8
ENSE00000906609
chr13:
28623674-28623521
154
FLT3_HUMAN
295-346
52
4
E:295-345
F:295-345
G:295-345
H:295-345
51
51
51
51
1.9
ENST00000241453
9
ENSE00000906608
chr13:
28622580-28622412
169
FLT3_HUMAN
346-402
57
4
E:348-402
F:348-402
G:348-402
H:348-402
55
55
55
55
1.10
ENST00000241453
10
ENSE00000827401
chr13:
28611425-28611322
104
FLT3_HUMAN
402-437
36
4
E:402-437 (gaps)
F:402-437 (gaps)
G:402-437 (gaps)
H:402-437 (gaps)
36
36
36
36
1.11
ENST00000241453
11
ENSE00000827402
chr13:
28610180-28610072
109
FLT3_HUMAN
437-473
37
4
E:437-468 (gaps)
F:437-468 (gaps)
G:437-468 (gaps)
H:437-468 (gaps)
32
32
32
32
1.12
ENST00000241453
12
ENSE00000827403
chr13:
28609810-28609632
179
FLT3_HUMAN
473-533
61
4
E:474-529 (gaps)
F:474-529 (gaps)
G:474-529 (gaps)
H:474-529 (gaps)
56
56
56
56
1.13
ENST00000241453
13
ENSE00000827404
chr13:
28608544-28608438
107
FLT3_HUMAN
533-568
36
0
-
-
1.14
ENST00000241453
14
ENSE00000827405
chr13:
28608351-28608219
133
FLT3_HUMAN
569-613
45
0
-
-
1.15
ENST00000241453
15
ENSE00000827406
chr13:
28608128-28608024
105
FLT3_HUMAN
613-648
36
0
-
-
1.16
ENST00000241453
16
ENSE00000827407
chr13:
28602425-28602315
111
FLT3_HUMAN
648-685
38
0
-
-
1.17
ENST00000241453
17
ENSE00000827408
chr13:
28601378-28601225
154
FLT3_HUMAN
685-736
52
0
-
-
1.19
ENST00000241453
19
ENSE00000827409
chr13:
28599080-28598998
83
FLT3_HUMAN
736-764
29
0
-
-
1.20
ENST00000241453
20
ENSE00000827410
chr13:
28597614-28597487
128
FLT3_HUMAN
764-806
43
0
-
-
1.21
ENST00000241453
21
ENSE00000827411
chr13:
28592726-28592604
123
FLT3_HUMAN
807-847
41
0
-
-
1.22
ENST00000241453
22
ENSE00000938491
chr13:
28589838-28589727
112
FLT3_HUMAN
848-885
38
0
-
-
1.23
ENST00000241453
23
ENSE00000938492
chr13:
28589393-28589294
100
FLT3_HUMAN
885-918
34
0
-
-
1.24a
ENST00000241453
24a
ENSE00000938493
chr13:
28588694-28588589
106
FLT3_HUMAN
918-953
36
0
-
-
1.26c
ENST00000241453
26c
ENSE00001487116
chr13:
28578311-28577411
901
FLT3_HUMAN
954-993
40
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Flt3_lig_3qs9D01 (D:3-132)
1b: PFAM_Flt3_lig_3qs9D02 (D:3-132)
1c: PFAM_Flt3_lig_3qs9D03 (D:3-132)
1d: PFAM_Flt3_lig_3qs9D04 (D:3-132)
2a: PFAM_ig_3qs9H01 (H:265-332)
2b: PFAM_ig_3qs9H02 (H:265-332)
2c: PFAM_ig_3qs9H03 (H:265-332)
2d: PFAM_ig_3qs9H04 (H:265-332)
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Clans
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(
)
Clan
:
4H_Cytokine
(48)
Family
:
Flt3_lig
(2)
Homo sapiens (Human)
(2)
1a
Flt3_lig-3qs9D01
D:3-132
1b
Flt3_lig-3qs9D02
D:3-132
1c
Flt3_lig-3qs9D03
D:3-132
1d
Flt3_lig-3qs9D04
D:3-132
Clan
:
Ig
(577)
Family
:
ig
(14)
Homo sapiens (Human)
(11)
2a
ig-3qs9H01
H:265-332
2b
ig-3qs9H02
H:265-332
2c
ig-3qs9H03
H:265-332
2d
ig-3qs9H04
H:265-332
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Asym.Unit (257 KB)
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