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3QRI
Asym. Unit
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Asym.Unit (104 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (99 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN ABL1 KINASE DOMAIN IN COMPLEX WITH DCC-2036
Authors
:
W. W. Chan, S. C. Wise, M. D. Kaufman, Y. M. Ahn, C. L. Ensinger, T. Haack, M J. Jones, J. W. Lord, W. P. Lu, D. Miller, W. C. Patt, B. D. Smith, P. A. Pet T. J. Rutkoski, H. Telikepalli, L. Vogeti, T. Yao, L. Chun, R. Clark, P. Evangelista, L. C. Gavrilescu, K. Lazarides, V. M. Zaleskas, L. J. S R. A. Van Etten, D. L. Flynn
Date
:
18 Feb 11 (Deposition) - 01 Jun 11 (Release) - 01 Jun 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Abl1, Kinase, Kinase Domain, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. W. Chan, S. C. Wise, M. D. Kaufman, Y. M. Ahn, C. L. Ensinger, T. Haack, M. M. Hood, J. Jones, J. W. Lord, W. P. Lu, D. Miller, W. C. Patt, B. D. Smith, P. A. Petillo, T. J. Rutkoski, H. Telikepalli, L. Vogeti, T. Yao, L. Chun, R. Clark, P. Evangelista, L. C. Gavrilescu, K. Lazarides, V. M. Zaleskas, L. J. Stewart, R. A. Van Etten, D. L. Flyn
Conformational Control Inhibition Of The Bcr-Abl1 Tyrosine Kinase, Including The Gatekeeper T315I Mutant, By The Switch-Control Inhibitor Dcc-2036.
Cancer Cell V. 19 556 2011
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 4-[4-({[3-TERT-BUTYL-1-(QUINOLIN-6... (919a)
1b: 4-[4-({[3-TERT-BUTYL-1-(QUINOLIN-6... (919b)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
919
2
Ligand/Ion
4-[4-({[3-TERT-BUTYL-1-(QUINOLIN-6-YL)-1H-PYRAZOL-5-YL]CARBAMOYL}AMINO)-3-FLUOROPHENOXY]-N-METHYLPYRIDINE-2-CARBOXAMIDE
2
NA
2
Ligand/Ion
SODIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:41 , HOH A:53 , LEU A:248 , VAL A:256 , ALA A:269 , LYS A:271 , GLU A:286 , MET A:290 , VAL A:299 , ILE A:313 , THR A:315 , GLU A:316 , PHE A:317 , MET A:318 , PHE A:359 , HIS A:361 , ALA A:380 , ASP A:381 , PHE A:382
BINDING SITE FOR RESIDUE 919 A 500
2
AC2
SOFTWARE
LEU B:248 , VAL B:256 , ALA B:269 , LYS B:271 , GLU B:286 , MET B:290 , VAL B:299 , THR B:315 , GLU B:316 , MET B:318 , LEU B:370 , ALA B:380 , ASP B:381 , PHE B:382 , HOH B:570
BINDING SITE FOR RESIDUE 919 B 2
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051693 (K247R, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051693
K
247
R
ABL1_HUMAN
Polymorphism
34549764
A/B
K
247
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:248-271,B:248-271)
2: PROTEIN_KINASE_TYR (A:359-371,B:359-371)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ABL1_HUMAN
248-271
2
A:248-271
B:248-271
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
ABL1_HUMAN
359-371
2
A:359-371
B:359-371
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Exons
(6, 12)
Info
All Exons
Exon 1.5 (A:224-274 | B:232-273)
Exon 1.6 (A:275-303 | B:279-303)
Exon 1.7 (A:303-362 | B:303-362)
Exon 1.8 (A:362-424 | B:362-424)
Exon 1.9 (A:424-475 | B:424-475)
Exon 1.10 (A:475-498 | B:475-498)
View:
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All Exon Boundaries
1: Boundary 1.4b/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10
7: Boundary 1.10/1.11
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000318560
2a
ENSE00001955789
chr9:
133710453-133710912
460
ABL1_HUMAN
1-27
27
0
-
-
1.3b
ENST00000318560
3b
ENSE00000984287
chr9:
133729451-133729624
174
ABL1_HUMAN
27-85
59
0
-
-
1.4b
ENST00000318560
4b
ENSE00000868149
chr9:
133730188-133730483
296
ABL1_HUMAN
85-183
99
0
-
-
1.5
ENST00000318560
5
ENSE00002065214
chr9:
133738150-133738422
273
ABL1_HUMAN
184-274
91
2
A:224-274
B:232-273
51
42
1.6
ENST00000318560
6
ENSE00001726283
chr9:
133747516-133747600
85
ABL1_HUMAN
275-303
29
2
A:275-303
B:279-303
29
25
1.7
ENST00000318560
7
ENSE00001700841
chr9:
133748247-133748424
178
ABL1_HUMAN
303-362
60
2
A:303-362
B:303-362
60
60
1.8
ENST00000318560
8
ENSE00001758713
chr9:
133750255-133750439
185
ABL1_HUMAN
362-424
63
2
A:362-424
B:362-424
63
63
1.9
ENST00000318560
9
ENSE00001741732
chr9:
133753802-133753954
153
ABL1_HUMAN
424-475
52
2
A:424-475
B:424-475
52
52
1.10
ENST00000318560
10
ENSE00001715343
chr9:
133755455-133755544
90
ABL1_HUMAN
475-505
31
2
A:475-498
B:475-498
24
24
1.11
ENST00000318560
11
ENSE00001781962
chr9:
133755887-133756051
165
ABL1_HUMAN
505-560
56
0
-
-
1.12b
ENST00000318560
12b
ENSE00001457584
chr9:
133759356-133763062
3707
ABL1_HUMAN
560-1130
571
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qria_ (A:)
1b: SCOP_d3qrib_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3qria_
A:
1b
d3qrib_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3qriB01 (B:242-493)
1b: PFAM_Pkinase_Tyr_3qriB02 (B:242-493)
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Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3qriB01
B:242-493
1b
Pkinase_Tyr-3qriB02
B:242-493
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