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3QQU
Asym. Unit
Info
Asym.Unit (195 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (51 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (51 KB)
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(1)
Title
:
COCRYSTAL STRUCTURE OF UNPHOSPHORYLATED IGF WITH PYRIMIDINE 8
Authors
:
X. Huang
Date
:
16 Feb 11 (Deposition) - 20 Apr 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Igf, Kinase, Inhibitor, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Buchanan, J. R. Newcomb, D. P. Carney, S. C. Chaffee, L. Chai, R. Cupples, L. F. Epstein, P. Gallant, Y. Gu, J. C. Harmange, K. Hodge, B. E. Houk, X. Huang, J. Jona, S. Joseph, H. T. Jun, R. Kumar, C. Li, J. Lu, T. Menges, M. J. Morrison, P. M. Novak, S. Van Der Plas, R. Radinsky, P. E. Rose, S. Sawant, J. R. Sun, S. Surapaneni, S. M. Turci, K. Xu, E. Yanez, H. Zhao, X. Zhu
Discovery Of 2, 4-Bis-Arylamino-1, 3-Pyrimidines As Insulin-Like Growth Factor-1 Receptor (Igf-1R) Inhibitors.
Bioorg. Med. Chem. Lett. V. 21 2394 2011
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: N~2~-[3-METHOXY-4-(MORPHOLIN-4-YL)... (01Pa)
1b: N~2~-[3-METHOXY-4-(MORPHOLIN-4-YL)... (01Pb)
1c: N~2~-[3-METHOXY-4-(MORPHOLIN-4-YL)... (01Pc)
1d: N~2~-[3-METHOXY-4-(MORPHOLIN-4-YL)... (01Pd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
01P
4
Ligand/Ion
N~2~-[3-METHOXY-4-(MORPHOLIN-4-YL)PHENYL]-N~4~-(QUINOLIN-3-YL)PYRIMIDINE-2,4-DIAMINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:1003 , GLN A:1004 , ALA A:1028 , GLU A:1077 , MET A:1079 , MET A:1139 , ASP A:1150 , MET A:1153 , ASP A:1156
BINDING SITE FOR RESIDUE 01P A 1
2
AC2
SOFTWARE
LEU B:1002 , GLN B:1004 , GLY B:1005 , VAL B:1010 , VAL B:1060 , GLU B:1077 , MET B:1079 , ASP B:1083 , MET B:1139 , ASP B:1150 , MET B:1153 , ASP B:1156
BINDING SITE FOR RESIDUE 01P B 1
3
AC3
SOFTWARE
ARG A:1220 , LEU C:1002 , GLY C:1003 , GLN C:1004 , GLU C:1077 , LEU C:1078 , MET C:1079 , GLY C:1082 , MET C:1139 , ASP C:1150 , MET C:1153
BINDING SITE FOR RESIDUE 01P C 1
4
AC4
SOFTWARE
ARG B:1220 , LEU D:1002 , GLY D:1003 , GLN D:1004 , ALA D:1028 , VAL D:1060 , GLU D:1077 , LEU D:1078 , MET D:1079 , GLY D:1082 , MET D:1139 , ASP D:1150 , MET D:1153 , THR D:1154 , ASP D:1156
BINDING SITE FOR RESIDUE 01P D 1
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076249 (R1253S, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076249
R
1256
S
IGF1R_HUMAN
Disease (IGF1RES)
---
A/B/C/D
R
1253
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:1002-1030,B:1002-1030,C:1002-103...)
2: PROTEIN_KINASE_TYR (A:1128-1140,B:1128-1140,C:1128-114...)
3: RECEPTOR_TYR_KIN_II (A:1156-1164,B:1156-1164,C:1156-116...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
IGF1R_HUMAN
1005-1033
4
A:1002-1030
B:1002-1030
C:1002-1030
D:1002-1030
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
IGF1R_HUMAN
1131-1143
4
A:1128-1140
B:1128-1140
C:1128-1140
D:1128-1140
3
RECEPTOR_TYR_KIN_II
PS00239
Receptor tyrosine kinase class II signature.
IGF1R_HUMAN
1159-1167
4
A:1156-1164
B:1156-1164
C:1156-1164
D:1156-1164
[
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Exons
(6, 24)
Info
All Exons
Exon 1.16 (A:988-1059 | B:985-1059 | C:986-10...)
Exon 1.17 (A:1060-1093 | B:1060-1092 | C:1060...)
Exon 1.18 (A:1104-1150 | B:1104-1150 | C:1100...)
Exon 1.19 (A:1150-1193 | B:1150-1193 | C:1150...)
Exon 1.20 (A:1193-1238 | B:1193-1238 | C:1193...)
Exon 1.21b (A:1238-1282 | B:1238-1283 | C:1238...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
5: Boundary 1.19/1.20
6: Boundary 1.20/1.21b
7: Boundary 1.21b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000268035
1a
ENSE00001618814
chr15:
99192200-99192904
705
IGF1R_HUMAN
1-32
32
0
-
-
1.2
ENST00000268035
2
ENSE00000943091
chr15:
99250791-99251336
546
IGF1R_HUMAN
32-214
183
0
-
-
1.3
ENST00000268035
3
ENSE00001320137
chr15:
99434554-99434866
313
IGF1R_HUMAN
214-318
105
0
-
-
1.4
ENST00000268035
4
ENSE00001129109
chr15:
99439986-99440134
149
IGF1R_HUMAN
318-368
51
0
-
-
1.5
ENST00000268035
5
ENSE00001301974
chr15:
99442706-99442850
145
IGF1R_HUMAN
368-416
49
0
-
-
1.6
ENST00000268035
6
ENSE00001129094
chr15:
99451914-99452128
215
IGF1R_HUMAN
416-488
73
0
-
-
1.7
ENST00000268035
7
ENSE00001129087
chr15:
99454544-99454670
127
IGF1R_HUMAN
488-530
43
0
-
-
1.8
ENST00000268035
8
ENSE00001129080
chr15:
99456273-99456511
239
IGF1R_HUMAN
530-610
81
0
-
-
1.9
ENST00000268035
9
ENSE00001129073
chr15:
99459193-99459360
168
IGF1R_HUMAN
610-666
57
0
-
-
1.10
ENST00000268035
10
ENSE00001129062
chr15:
99459901-99460105
205
IGF1R_HUMAN
666-734
69
0
-
-
1.11
ENST00000268035
11
ENSE00001129055
chr15:
99465377-99465660
284
IGF1R_HUMAN
734-829
96
0
-
-
1.12
ENST00000268035
12
ENSE00001129044
chr15:
99467105-99467241
137
IGF1R_HUMAN
829-874
46
0
-
-
1.13
ENST00000268035
13
ENSE00001311160
chr15:
99467754-99467913
160
IGF1R_HUMAN
875-928
54
0
-
-
1.14a
ENST00000268035
14a
ENSE00001318374
chr15:
99472787-99472889
103
IGF1R_HUMAN
928-962
35
0
-
-
1.15
ENST00000268035
15
ENSE00001297944
chr15:
99473464-99473534
71
IGF1R_HUMAN
962-986
25
0
-
-
1.16
ENST00000268035
16
ENSE00001129013
chr15:
99478053-99478282
230
IGF1R_HUMAN
986-1062
77
4
A:988-1059
B:985-1059
C:986-1059
D:986-1059
72
75
74
74
1.17
ENST00000268035
17
ENSE00001129006
chr15:
99478545-99478655
111
IGF1R_HUMAN
1063-1099
37
4
A:1060-1093
B:1060-1092
C:1060-1095
D:1060-1095
34
33
36
36
1.18
ENST00000268035
18
ENSE00001319679
chr15:
99482430-99482589
160
IGF1R_HUMAN
1100-1153
54
4
A:1104-1150
B:1104-1150
C:1100-1150
D:1101-1150
47
47
51
50
1.19
ENST00000268035
19
ENSE00001597369
chr15:
99486152-99486281
130
IGF1R_HUMAN
1153-1196
44
4
A:1150-1193
B:1150-1193
C:1150-1193
D:1150-1193
44
44
44
44
1.20
ENST00000268035
20
ENSE00001128979
chr15:
99491803-99491937
135
IGF1R_HUMAN
1196-1241
46
4
A:1193-1238
B:1193-1238
C:1193-1238
D:1193-1238
46
46
46
46
1.21b
ENST00000268035
21b
ENSE00001316091
chr15:
99500290-99507759
7470
IGF1R_HUMAN
1241-1367
127
4
A:1238-1282
B:1238-1283
C:1238-1282
D:1238-1282
45
46
45
45
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3qqua_ (A:)
1b: SCOP_d3qqub_ (B:)
1c: SCOP_d3qquc_ (C:)
1d: SCOP_d3qqud_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Insulin-like growth factor 1 receptor
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3qqua_
A:
1b
d3qqub_
B:
1c
d3qquc_
C:
1d
d3qqud_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_3qquD01 (D:996-1263)
1b: PFAM_Pkinase_Tyr_3qquD02 (D:996-1263)
1c: PFAM_Pkinase_Tyr_3qquD03 (D:996-1263)
1d: PFAM_Pkinase_Tyr_3qquD04 (D:996-1263)
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Clans
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)
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)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-3qquD01
D:996-1263
1b
Pkinase_Tyr-3qquD02
D:996-1263
1c
Pkinase_Tyr-3qquD03
D:996-1263
1d
Pkinase_Tyr-3qquD04
D:996-1263
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