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3QQR
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PARASPONIA HEMOGLOBIN; DIFFERENTIAL HEME COORDINATION IS LINKED TO QUATERNARY STRUCTURE
Authors
:
S. Kakar, R. Sturms, A. Savage, J. C. Nix, A. Dispirito, M. S. Hargrove
Date
:
16 Feb 11 (Deposition) - 27 Apr 11 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.16
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Globin Fold, Oxygen Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Kakar, R. Sturms, A. Tiffany, J. C. Nix, A. A. Dispirito, M. S. Hargrove
Crystal Structures Of Parasponia And Trema Hemoglobins: Differential Heme Coordination Is Linked To Quaternary Structure.
Biochemistry V. 50 4273 2011
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 1,4-DIETHYLENE DIOXIDE (DIOa)
1b: 1,4-DIETHYLENE DIOXIDE (DIOb)
1c: 1,4-DIETHYLENE DIOXIDE (DIOc)
1d: 1,4-DIETHYLENE DIOXIDE (DIOd)
1e: 1,4-DIETHYLENE DIOXIDE (DIOe)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DIO
5
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:50 , PHE A:51 , TYR A:53 , LYS A:66 , HIS A:70 , THR A:73 , ARG A:100 , ILE A:101 , ILE A:104 , HIS A:105 , VAL A:110 , HIS A:114 , PHE A:115 , THR A:118 , TYR A:146 , LEU A:149 , HOH A:178 , HOH A:189
BINDING SITE FOR RESIDUE HEM A 163
2
AC2
SOFTWARE
LEU B:50 , PHE B:51 , SER B:52 , HIS B:70 , ARG B:100 , ILE B:104 , HIS B:105 , THR B:108 , VAL B:110 , HIS B:114 , PHE B:115 , THR B:118 , LEU B:149 , ILE B:153 , HOH B:221
BINDING SITE FOR RESIDUE HEM B 163
3
AC3
SOFTWARE
LYS A:127 , TRP A:134 , LYS A:139 , HOH B:188
BINDING SITE FOR RESIDUE DIO A 164
4
AC4
SOFTWARE
ARG A:119 , LYS A:139 , ASN A:140 , HOH A:194
BINDING SITE FOR RESIDUE DIO A 165
5
AC5
SOFTWARE
LYS B:127 , TRP B:134 , LYS B:139
BINDING SITE FOR RESIDUE DIO B 164
6
AC6
SOFTWARE
PHE A:115 , GLU A:116 , ARG A:119 , TYR A:146 , ASP A:147 , VAL A:150 , LYS A:154 , HOH A:227
BINDING SITE FOR RESIDUE DIO A 166
7
AC7
SOFTWARE
GLU A:12 , GLU A:13 , ARG A:86 , HOH A:232 , SER B:52 , TYR B:53
BINDING SITE FOR RESIDUE DIO A 167
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_HBPL_PARAD_001 (E31D, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_HBPL_PARAD_001
*
E
31
D
HBPL_PARAD
---
---
A/B
E
31
D
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:10-153,B:10-153)
2: PLANT_GLOBIN (A:64-75,B:64-75)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBPL_PARAD
10-153
2
A:10-153
B:10-153
2
PLANT_GLOBIN
PS00208
Plant hemoglobins signature.
HBPL_PARAD
64-75
2
A:64-75
B:64-75
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3qqra_ (A:)
1b: SCOP_d3qqrb_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
automated matches
(99)
Parasponia andersonii [TaxId: 3476]
(1)
1a
d3qqra_
A:
1b
d3qqrb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Globin_3qqrB01 (B:14-123)
1b: PFAM_Globin_3qqrB02 (B:14-123)
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Organisms
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)
Clan
:
Globin
(291)
Family
:
Globin
(264)
Parasponia andersonii (Sponia andersonii)
(1)
1a
Globin-3qqrB01
B:14-123
1b
Globin-3qqrB02
B:14-123
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Asymmetric Unit 1
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Asym.Unit (58 KB)
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