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3QMO
Asym. Unit
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Asym.Unit (195 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF NS-398 BOUND TO THE CYCLOOXYGENASE CHANNEL OF CYCLOOXYGENASE-2
Authors
:
A. J. Vecchio, M. G. Malkowski
Date
:
04 Feb 11 (Deposition) - 03 Aug 11 (Release) - 19 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Biological Dimer, Oxidoreductase, Dimer, N-Glycosylation, Monotopic Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Vecchio, M. G. Malkowski
The Structure Of Ns-398 Bound To Cyclooxygenase-2.
J. Struct. Biol. V. 176 254 2011
[
close entry info
]
Hetero Components
(8, 23)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: B-OCTYLGLUCOSIDE (BOGa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
8a: N-[2-(CYCLOHEXYLOXY)-4-NITROPHENYL... (NS4a)
8b: N-[2-(CYCLOHEXYLOXY)-4-NITROPHENYL... (NS4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
3
GOL
6
Ligand/Ion
GLYCEROL
4
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
8
NS4
2
Ligand/Ion
N-[2-(CYCLOHEXYLOXY)-4-NITROPHENYL]METHANESULFONAMIDE
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:36 , CYS A:37 , ASN A:39 , PRO A:154 , VAL A:155 , ALA A:156 , HOH A:640
BINDING SITE FOR RESIDUE GOL A 1
02
AC2
SOFTWARE
GLN A:203 , HIS A:207 , HEM A:620
BINDING SITE FOR RESIDUE GOL A 6
03
AC3
SOFTWARE
SER A:143 , LEU A:145 , LEU B:224
BINDING SITE FOR RESIDUE GOL A 7
04
AC4
SOFTWARE
HIS A:90 , ARG A:120 , LEU A:352 , SER A:353 , TYR A:355 , TYR A:385 , TRP A:387 , PHE A:518 , VAL A:523 , ALA A:527 , LEU A:531 , HOH A:644
BINDING SITE FOR RESIDUE NS4 A 619
05
AC5
SOFTWARE
GOL A:6 , TYR A:148 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , VAL A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , PHE A:404
BINDING SITE FOR RESIDUE HEM A 620
06
AC6
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , NDG A:662
BINDING SITE FOR RESIDUE NAG A 661
07
AC7
SOFTWARE
NAG A:661
BINDING SITE FOR RESIDUE NDG A 662
08
AC8
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , HOH A:637 , NAG A:672
BINDING SITE FOR RESIDUE NAG A 671
09
AC9
SOFTWARE
ARG A:216 , NAG A:671 , ASP B:239 , MAN B:673
BINDING SITE FOR RESIDUE NAG A 672
10
BC1
SOFTWARE
ASN A:410 , SER A:412 , ILE A:413 , HOH A:670
BINDING SITE FOR RESIDUE NAG A 681
11
BC2
SOFTWARE
GLU A:179 , LYS A:180 , ARG A:184 , ARG A:185 , ARG A:438 , GLU A:486 , GLU A:490 , GLU B:179 , ARG B:184 , ILE B:442 , GLN B:445
BINDING SITE FOR RESIDUE BOG A 703
12
BC3
SOFTWARE
LEU A:224 , SER B:143 , HOH B:623
BINDING SITE FOR RESIDUE GOL B 2
13
BC4
SOFTWARE
CYS B:36 , CYS B:37 , ASN B:39 , PRO B:154 , VAL B:155 , ALA B:156
BINDING SITE FOR RESIDUE GOL B 3
14
BC5
SOFTWARE
HIS B:207 , VAL B:291 , LEU B:294 , HEM B:619
BINDING SITE FOR RESIDUE GOL B 4
15
BC6
SOFTWARE
NAG A:672 , HIS B:242 , HOH B:676
BINDING SITE FOR RESIDUE MAN B 673
16
BC7
SOFTWARE
ARG B:120 , VAL B:349 , LEU B:352 , SER B:353 , TYR B:355 , TRP B:387 , PHE B:518 , MET B:522 , VAL B:523 , GLY B:526 , ALA B:527 , LEU B:531 , HOH B:626
BINDING SITE FOR RESIDUE NS4 B 1
17
BC8
SOFTWARE
GOL B:4 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , HIS B:214 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , LEU B:391
BINDING SITE FOR RESIDUE HEM B 619
18
BC9
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , NDG B:662
BINDING SITE FOR RESIDUE NAG B 661
19
CC1
SOFTWARE
NAG B:661
BINDING SITE FOR RESIDUE NDG B 662
20
CC2
SOFTWARE
GLU B:140 , ASN B:144 , TYR B:147 , ARG B:216 , PHE B:220 , HOH B:659 , NAG B:672
BINDING SITE FOR RESIDUE NAG B 671
21
CC3
SOFTWARE
ARG B:216 , BMA B:620 , NAG B:671
BINDING SITE FOR RESIDUE NAG B 672
22
CC4
SOFTWARE
HOH B:635 , HOH B:668 , NAG B:672
BINDING SITE FOR RESIDUE BMA B 620
23
CC5
SOFTWARE
GLN B:406 , ASN B:410 , HOH B:643
BINDING SITE FOR RESIDUE NAG B 681
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-582,B:110-582)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
A:110-582
B:110-582
[
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]
Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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