PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3QMN
Biol. Unit 6
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (150 KB)
Biol.Unit 3 (149 KB)
Biol.Unit 4 (150 KB)
Biol.Unit 5 (151 KB)
Biol.Unit 6 (150 KB)
Biol.Unit 7 (152 KB)
Biol.Unit 8 (148 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF 4'-PHOSPHOPANTETHEINYL TRANSFERASE ACPS FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR
Authors
:
Y. Kim, A. S. Halavaty, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak, C Structural Genomics Of Infectious Diseases (Csgid)
Date
:
04 Feb 11 (Deposition) - 02 Mar 11 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Biol. Unit 6: P,Q,R (1x)
Biol. Unit 7: S,T,U (1x)
Biol. Unit 8: V,W,X (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Sandwich, Transferase, Acyl Carrier Protein, Cytosol
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Halavaty, Y. Kim, G. Minasov, L. Shuvalova, I. Dubrovska, J. Winsor, M. Zhou, O. Onopriyenko, T. Skarina, L. Papazisi, K. Kwon, S. N. Peterson, A. Joachimiak, A. Savchenko, W. F. Anderson
Structural Characterization And Comparison Of Three Acyl-Carrier-Protein Synthases From Pathogenic Bacteria.
Acta Crystallogr. , Sect. D V. 68 1359 2012
[
close entry info
]
Hetero Components
(4, 13)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
3a: CALCIUM ION (CAa)
3aa: CALCIUM ION (CAaa)
3ab: CALCIUM ION (CAab)
3ac: CALCIUM ION (CAac)
3ad: CALCIUM ION (CAad)
3ae: CALCIUM ION (CAae)
3af: CALCIUM ION (CAaf)
3ag: CALCIUM ION (CAag)
3ah: CALCIUM ION (CAah)
3ai: CALCIUM ION (CAai)
3aj: CALCIUM ION (CAaj)
3ak: CALCIUM ION (CAak)
3al: CALCIUM ION (CAal)
3am: CALCIUM ION (CAam)
3an: CALCIUM ION (CAan)
3ao: CALCIUM ION (CAao)
3ap: CALCIUM ION (CAap)
3aq: CALCIUM ION (CAaq)
3ar: CALCIUM ION (CAar)
3as: CALCIUM ION (CAas)
3at: CALCIUM ION (CAat)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
3g: CALCIUM ION (CAg)
3h: CALCIUM ION (CAh)
3i: CALCIUM ION (CAi)
3j: CALCIUM ION (CAj)
3k: CALCIUM ION (CAk)
3l: CALCIUM ION (CAl)
3m: CALCIUM ION (CAm)
3n: CALCIUM ION (CAn)
3o: CALCIUM ION (CAo)
3p: CALCIUM ION (CAp)
3q: CALCIUM ION (CAq)
3r: CALCIUM ION (CAr)
3s: CALCIUM ION (CAs)
3t: CALCIUM ION (CAt)
3u: CALCIUM ION (CAu)
3v: CALCIUM ION (CAv)
3w: CALCIUM ION (CAw)
3x: CALCIUM ION (CAx)
3y: CALCIUM ION (CAy)
3z: CALCIUM ION (CAz)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
4e: CHLORIDE ION (CLe)
4f: CHLORIDE ION (CLf)
4g: CHLORIDE ION (CLg)
4h: CHLORIDE ION (CLh)
4i: CHLORIDE ION (CLi)
5a: COENZYME A (COAa)
5b: COENZYME A (COAb)
5c: COENZYME A (COAc)
5d: COENZYME A (COAd)
5e: COENZYME A (COAe)
5f: COENZYME A (COAf)
5g: COENZYME A (COAg)
5h: COENZYME A (COAh)
5i: COENZYME A (COAi)
5j: COENZYME A (COAj)
5k: COENZYME A (COAk)
5l: COENZYME A (COAl)
5m: COENZYME A (COAm)
5n: COENZYME A (COAn)
5o: COENZYME A (COAo)
5p: COENZYME A (COAp)
5q: COENZYME A (COAq)
5r: COENZYME A (COAr)
5s: COENZYME A (COAs)
5t: COENZYME A (COAt)
5u: COENZYME A (COAu)
5v: COENZYME A (COAv)
5w: COENZYME A (COAw)
5x: COENZYME A (COAx)
6a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
6b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
6c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
6d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
6e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
6f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
6g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
6h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
6i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
6j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
6k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
6l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
6m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
6n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
6o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
6p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
7a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
7b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
7c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
7d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
7e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
7f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
8a: SELENOMETHIONINE (MSEa)
8aa: SELENOMETHIONINE (MSEaa)
8ab: SELENOMETHIONINE (MSEab)
8ac: SELENOMETHIONINE (MSEac)
8ad: SELENOMETHIONINE (MSEad)
8ae: SELENOMETHIONINE (MSEae)
8af: SELENOMETHIONINE (MSEaf)
8ag: SELENOMETHIONINE (MSEag)
8ah: SELENOMETHIONINE (MSEah)
8ai: SELENOMETHIONINE (MSEai)
8aj: SELENOMETHIONINE (MSEaj)
8ak: SELENOMETHIONINE (MSEak)
8al: SELENOMETHIONINE (MSEal)
8am: SELENOMETHIONINE (MSEam)
8an: SELENOMETHIONINE (MSEan)
8ao: SELENOMETHIONINE (MSEao)
8ap: SELENOMETHIONINE (MSEap)
8aq: SELENOMETHIONINE (MSEaq)
8ar: SELENOMETHIONINE (MSEar)
8as: SELENOMETHIONINE (MSEas)
8at: SELENOMETHIONINE (MSEat)
8au: SELENOMETHIONINE (MSEau)
8av: SELENOMETHIONINE (MSEav)
8b: SELENOMETHIONINE (MSEb)
8c: SELENOMETHIONINE (MSEc)
8d: SELENOMETHIONINE (MSEd)
8e: SELENOMETHIONINE (MSEe)
8f: SELENOMETHIONINE (MSEf)
8g: SELENOMETHIONINE (MSEg)
8h: SELENOMETHIONINE (MSEh)
8i: SELENOMETHIONINE (MSEi)
8j: SELENOMETHIONINE (MSEj)
8k: SELENOMETHIONINE (MSEk)
8l: SELENOMETHIONINE (MSEl)
8m: SELENOMETHIONINE (MSEm)
8n: SELENOMETHIONINE (MSEn)
8o: SELENOMETHIONINE (MSEo)
8p: SELENOMETHIONINE (MSEp)
8q: SELENOMETHIONINE (MSEq)
8r: SELENOMETHIONINE (MSEr)
8s: SELENOMETHIONINE (MSEs)
8t: SELENOMETHIONINE (MSEt)
8u: SELENOMETHIONINE (MSEu)
8v: SELENOMETHIONINE (MSEv)
8w: SELENOMETHIONINE (MSEw)
8x: SELENOMETHIONINE (MSEx)
8y: SELENOMETHIONINE (MSEy)
8z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
-1
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
ACT
1
Ligand/Ion
ACETATE ION
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
COA
3
Ligand/Ion
COENZYME A
6
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
7
MRD
-1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
8
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: BC8 (SOFTWARE)
02: FC9 (SOFTWARE)
03: HC8 (SOFTWARE)
04: HC9 (SOFTWARE)
05: IC1 (SOFTWARE)
06: IC2 (SOFTWARE)
07: IC3 (SOFTWARE)
08: IC4 (SOFTWARE)
09: IC5 (SOFTWARE)
10: IC6 (SOFTWARE)
11: IC7 (SOFTWARE)
12: IC8 (SOFTWARE)
13: IC9 (SOFTWARE)
14: JC1 (SOFTWARE)
15: JC2 (SOFTWARE)
16: JC3 (SOFTWARE)
17: LC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
LYS D:51 , HIS D:80 , LEU D:83 , GLY D:84 , LYS D:85 , PRO D:86 , ILE D:110 , SER D:111 , ASP D:112 , HOH D:284 , HOH D:297 , HOH D:330 , HOH D:366 , HOH D:378 , HOH D:380 , HOH D:381 , HOH D:383 , HOH D:2197 , HOH D:2368 , CA D:2540 , ASP F:8 , ARG F:29 , GLU F:57 , SER F:60 , LYS F:61 , GLY F:64 , THR F:65 , GLY F:66 , ILE F:67 , PHE F:73 , HOH F:514 , CA F:2516 , MRD F:2559 , SER R:99
BINDING SITE FOR RESIDUE COA D 283
02
FC9
SOFTWARE
ASP K:8 , ARG K:29 , GLU K:57 , SER K:60 , LYS K:61 , GLY K:64 , THR K:65 , GLY K:66 , ILE K:67 , PHE K:73 , CA K:2529 , MRD K:2564 , LYS L:51 , HIS L:80 , LEU L:83 , GLY L:84 , LYS L:85 , PRO L:86 , ILE L:110 , SER L:111 , ASP L:112 , HOH L:1009 , HOH L:1025 , HOH L:1055 , HOH L:1063 , HOH L:1066 , HOH L:1070 , HOH L:1081 , HOH L:1090 , HOH L:1094 , HOH L:1099 , HOH L:1113 , HOH L:1122 , CA L:2528 , SER Q:99 , GLN Q:100 , GLN Q:102
BINDING SITE FOR RESIDUE COA L 1008
03
HC8
SOFTWARE
LYS P:51 , HIS P:80 , LEU P:83 , GLY P:84 , LYS P:85 , PRO P:86 , ILE P:110 , SER P:111 , ASP P:112 , HOH P:1429 , HOH P:1446 , HOH P:1451 , HOH P:1471 , HOH P:1477 , HOH P:1487 , HOH P:1489 , HOH P:1504 , HOH P:1505 , HOH P:1513 , HOH P:1514 , HOH P:1658 , CA P:2534 , ASP R:8 , ARG R:29 , GLU R:57 , SER R:60 , LYS R:61 , GLY R:64 , THR R:65 , GLY R:66 , ILE R:67 , CA R:1607 , MPD R:2566
BINDING SITE FOR RESIDUE COA P 1424
04
HC9
SOFTWARE
ARG P:14 , VAL P:15
BINDING SITE FOR RESIDUE MPD P 1425
05
IC1
SOFTWARE
ASP P:8 , GLU P:57 , HOH P:1443 , COA Q:1515 , HOH Q:1570
BINDING SITE FOR RESIDUE CA P 1426
06
IC2
SOFTWARE
ASP P:112 , COA P:1424 , HOH P:1513
BINDING SITE FOR RESIDUE CA P 2534
07
IC3
SOFTWARE
GLN P:44 , PHE P:48 , LYS P:51 , HOH P:1477
BINDING SITE FOR RESIDUE CL P 2544
08
IC4
SOFTWARE
ASP P:8 , ARG P:29 , GLU P:57 , LYS P:61 , GLY P:64 , THR P:65 , GLY P:66 , ILE P:67 , CA P:1426 , HOH P:1585 , LYS Q:51 , HIS Q:80 , LEU Q:83 , GLY Q:84 , LYS Q:85 , PRO Q:86 , ILE Q:110 , SER Q:111 , ASP Q:112 , HOH Q:1520 , HOH Q:1533 , HOH Q:1546 , HOH Q:1560 , HOH Q:1569 , HOH Q:1570 , HOH Q:1587 , HOH Q:1590 , HOH Q:1597 , HOH Q:2427 , HOH Q:2511 , CA Q:2535
BINDING SITE FOR RESIDUE COA Q 1515
09
IC5
SOFTWARE
ASP Q:112 , COA Q:1515 , HOH Q:1556 , HOH Q:2427 , HOH Q:2511
BINDING SITE FOR RESIDUE CA Q 2535
10
IC6
SOFTWARE
ASP Q:8 , GLU Q:57 , HOH Q:1552 , COA R:1606 , HOH R:1653
BINDING SITE FOR RESIDUE CA Q 2536
11
IC7
SOFTWARE
ALA Q:10 , ARG Q:14 , VAL Q:15 , HOH Q:1605
BINDING SITE FOR RESIDUE MPD Q 2567
12
IC8
SOFTWARE
ASP Q:8 , GLU Q:57 , SER Q:60 , LYS Q:61 , GLY Q:64 , THR Q:65 , GLY Q:66 , ILE Q:67 , CA Q:2536 , LYS R:51 , HIS R:80 , LEU R:83 , GLY R:84 , LYS R:85 , PRO R:86 , ILE R:110 , SER R:111 , ASP R:112 , HOH R:1608 , HOH R:1609 , HOH R:1631 , HOH R:1635 , HOH R:1647 , HOH R:1651 , HOH R:1653 , HOH R:1654 , HOH R:1672 , HOH R:2394 , CA R:2512 , ACT R:2595
BINDING SITE FOR RESIDUE COA R 1606
13
IC9
SOFTWARE
COA P:1424 , HOH P:1658 , ASP R:8 , GLU R:57 , HOH R:1657
BINDING SITE FOR RESIDUE CA R 1607
14
JC1
SOFTWARE
ASP R:112 , COA R:1606 , HOH R:1642 , ACT R:2595
BINDING SITE FOR RESIDUE CA R 2512
15
JC2
SOFTWARE
COA P:1424 , ALA R:10 , ARG R:14 , PHE R:53 , HOH R:2228
BINDING SITE FOR RESIDUE MPD R 2566
16
JC3
SOFTWARE
LYS R:51 , ASP R:112 , COA R:1606 , HOH R:1631 , CA R:2512
BINDING SITE FOR RESIDUE ACT R 2595
17
LC9
SOFTWARE
SER P:99 , GLN P:100 , LYS V:51 , HIS V:80 , LEU V:83 , GLY V:84 , LYS V:85 , PRO V:86 , ILE V:110 , SER V:111 , ASP V:112 , HOH V:1947 , HOH V:1963 , CA V:2557 , ASP X:8 , ARG X:29 , GLU X:57 , SER X:60 , LYS X:61 , GLY X:64 , THR X:65 , GLY X:66 , ILE X:67 , PHE X:73 , HOH X:1950 , HOH X:1972 , HOH X:1996 , HOH X:2005 , HOH X:2150 , CA X:2556
BINDING SITE FOR RESIDUE COA X 1944
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d3qmna_ (A:)
1b: SCOP_d3qmnb_ (B:)
1c: SCOP_d3qmnk_ (K:)
1d: SCOP_d3qmnl_ (L:)
1e: SCOP_d3qmnm_ (M:)
1f: SCOP_d3qmnn_ (N:)
1g: SCOP_d3qmno_ (O:)
1h: SCOP_d3qmnp_ (P:)
1i: SCOP_d3qmnq_ (Q:)
1j: SCOP_d3qmnr_ (R:)
1k: SCOP_d3qmns_ (S:)
1l: SCOP_d3qmnt_ (T:)
1m: SCOP_d3qmnc_ (C:)
1n: SCOP_d3qmnu_ (U:)
1o: SCOP_d3qmnv_ (V:)
1p: SCOP_d3qmnw_ (W:)
1q: SCOP_d3qmnx_ (X:)
1r: SCOP_d3qmnd_ (D:)
1s: SCOP_d3qmne_ (E:)
1t: SCOP_d3qmnf_ (F:)
1u: SCOP_d3qmng_ (G:)
1v: SCOP_d3qmnh_ (H:)
1w: SCOP_d3qmni_ (I:)
1x: SCOP_d3qmnj_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
4'-phosphopantetheinyl transferase
(26)
Superfamily
:
4'-phosphopantetheinyl transferase
(26)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Vibrio cholerae [TaxId: 243277]
(1)
1a
d3qmna_
A:
1b
d3qmnb_
B:
1c
d3qmnk_
K:
1d
d3qmnl_
L:
1e
d3qmnm_
M:
1f
d3qmnn_
N:
1g
d3qmno_
O:
1h
d3qmnp_
P:
1i
d3qmnq_
Q:
1j
d3qmnr_
R:
1k
d3qmns_
S:
1l
d3qmnt_
T:
1m
d3qmnc_
C:
1n
d3qmnu_
U:
1o
d3qmnv_
V:
1p
d3qmnw_
W:
1q
d3qmnx_
X:
1r
d3qmnd_
D:
1s
d3qmne_
E:
1t
d3qmnf_
F:
1u
d3qmng_
G:
1v
d3qmnh_
H:
1w
d3qmni_
I:
1x
d3qmnj_
J:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 24)
Info
all PFAM domains
1a: PFAM_ACPS_3qmnX01 (X:4-121)
1b: PFAM_ACPS_3qmnX02 (X:4-121)
1c: PFAM_ACPS_3qmnX03 (X:4-121)
1d: PFAM_ACPS_3qmnX04 (X:4-121)
1e: PFAM_ACPS_3qmnX05 (X:4-121)
1f: PFAM_ACPS_3qmnX06 (X:4-121)
1g: PFAM_ACPS_3qmnX07 (X:4-121)
1h: PFAM_ACPS_3qmnX08 (X:4-121)
1i: PFAM_ACPS_3qmnX09 (X:4-121)
1j: PFAM_ACPS_3qmnX10 (X:4-121)
1k: PFAM_ACPS_3qmnX11 (X:4-121)
1l: PFAM_ACPS_3qmnX12 (X:4-121)
1m: PFAM_ACPS_3qmnX13 (X:4-121)
1n: PFAM_ACPS_3qmnX14 (X:4-121)
1o: PFAM_ACPS_3qmnX15 (X:4-121)
1p: PFAM_ACPS_3qmnX16 (X:4-121)
1q: PFAM_ACPS_3qmnX17 (X:4-121)
1r: PFAM_ACPS_3qmnX18 (X:4-121)
1s: PFAM_ACPS_3qmnX19 (X:4-121)
1t: PFAM_ACPS_3qmnX20 (X:4-121)
1u: PFAM_ACPS_3qmnX21 (X:4-121)
1v: PFAM_ACPS_3qmnX22 (X:4-121)
1w: PFAM_ACPS_3qmnX23 (X:4-121)
1x: PFAM_ACPS_3qmnX24 (X:4-121)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ACPS]
(13)
Family
:
ACPS
(13)
Vibrio cholerae
(1)
1a
ACPS-3qmnX01
X:4-121
1b
ACPS-3qmnX02
X:4-121
1c
ACPS-3qmnX03
X:4-121
1d
ACPS-3qmnX04
X:4-121
1e
ACPS-3qmnX05
X:4-121
1f
ACPS-3qmnX06
X:4-121
1g
ACPS-3qmnX07
X:4-121
1h
ACPS-3qmnX08
X:4-121
1i
ACPS-3qmnX09
X:4-121
1j
ACPS-3qmnX10
X:4-121
1k
ACPS-3qmnX11
X:4-121
1l
ACPS-3qmnX12
X:4-121
1m
ACPS-3qmnX13
X:4-121
1n
ACPS-3qmnX14
X:4-121
1o
ACPS-3qmnX15
X:4-121
1p
ACPS-3qmnX16
X:4-121
1q
ACPS-3qmnX17
X:4-121
1r
ACPS-3qmnX18
X:4-121
1s
ACPS-3qmnX19
X:4-121
1t
ACPS-3qmnX20
X:4-121
1u
ACPS-3qmnX21
X:4-121
1v
ACPS-3qmnX22
X:4-121
1w
ACPS-3qmnX23
X:4-121
1x
ACPS-3qmnX24
X:4-121
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (151 KB)
Header - Biol.Unit 1
Biol.Unit 2 (150 KB)
Header - Biol.Unit 2
Biol.Unit 3 (149 KB)
Header - Biol.Unit 3
Biol.Unit 4 (150 KB)
Header - Biol.Unit 4
Biol.Unit 5 (151 KB)
Header - Biol.Unit 5
Biol.Unit 6 (150 KB)
Header - Biol.Unit 6
Biol.Unit 7 (152 KB)
Header - Biol.Unit 7
Biol.Unit 8 (148 KB)
Header - Biol.Unit 8
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3QMN
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help