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3QML
Asym. Unit
Info
Asym.Unit (442 KB)
Biol.Unit 1 (217 KB)
Biol.Unit 2 (223 KB)
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(1)
Title
:
THE STRUCTURAL ANALYSIS OF SIL1-BIP COMPLEX REVEALS THE MECHANISM FOR SIL1 TO FUNCTION AS A NOVEL NUCLEOTIDE EXCHANGE FACTOR
Authors
:
M. Yan, J. Z. Li, B. D. Sha
Date
:
04 Feb 11 (Deposition) - 29 Jun 11 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Armadillo Like Repeats, Chaperone-Protein Transport Complex
(Keyword Search:
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Reference
:
M. Yan, J. Li, B. Sha
Structural Analysis Of The Sil1-Bip Complex Reveals The Mechanism For Sil1 To Function As A Nucleotide-Exchange Factor.
Biochem. J. V. 438 447 2011
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
2g: PHOSPHATE ION (PO4g)
2h: PHOSPHATE ION (PO4h)
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No.
Name
Count
Type
Full Name
1
MG
3
Ligand/Ion
MAGNESIUM ION
2
PO4
8
Ligand/Ion
PHOSPHATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY B:58 , THR B:59 , THR B:60 , TYR B:61 , GLY B:246 , GLY B:247
BINDING SITE FOR RESIDUE PO4 B 1
02
AC2
SOFTWARE
THR A:59 , THR A:60 , TYR A:61 , GLY A:246 , GLY A:247 , HOH A:444 , HOH A:452
BINDING SITE FOR RESIDUE PO4 A 2
03
AC3
SOFTWARE
GLU B:276 , ASP B:279 , GLU B:313 , LYS B:316
BINDING SITE FOR RESIDUE PO4 B 3
04
AC4
SOFTWARE
GLU A:276 , ASP A:279 , GLU A:313 , LYS A:316
BINDING SITE FOR RESIDUE PO4 A 4
05
AC5
SOFTWARE
HOH C:60 , PHE C:218 , PRO C:219 , ASN C:220 , PHE C:221 , LYS C:224
BINDING SITE FOR RESIDUE PO4 C 5
06
AC6
SOFTWARE
GLU C:326 , HOH C:434 , HOH C:436
BINDING SITE FOR RESIDUE PO4 C 6
07
AC7
SOFTWARE
PHE D:218 , PRO D:219 , ASN D:220 , LYS D:224
BINDING SITE FOR RESIDUE PO4 D 7
08
AC8
SOFTWARE
GLU D:274 , ASN D:277 , GLU D:326 , HOH D:434
BINDING SITE FOR RESIDUE PO4 D 8
09
AC9
SOFTWARE
HOH A:477
BINDING SITE FOR RESIDUE MG A 1
10
BC1
SOFTWARE
LYS A:68 , ASN A:69 , GLN A:285
BINDING SITE FOR RESIDUE MG A 427
11
BC2
SOFTWARE
LYS C:363
BINDING SITE FOR RESIDUE MG C 1
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: HSP70_1 (A:55-62,B:55-62)
2: HSP70_2 (A:242-255,B:242-255)
3: HSP70_3 (A:379-393,B:379-393)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP70_1
PS00297
Heat shock hsp70 proteins family signature 1.
GRP78_YEAST
55-62
2
A:55-62
B:55-62
2
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
GRP78_YEAST
242-255
2
A:242-255
B:242-255
3
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
GRP78_YEAST
379-393
2
A:379-393
B:379-393
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3qmla1 (A:48-234)
1b: SCOP_d3qmlb1 (B:50-232)
1c: SCOP_d3qmlb2 (B:239-425)
1d: SCOP_d3qmla2 (A:235-424)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
1a
d3qmla1
A:48-234
1b
d3qmlb1
B:50-232
1c
d3qmlb2
B:239-425
1d
d3qmla2
A:235-424
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HSP70_3qmlB01 (B:52-425)
1b: PFAM_HSP70_3qmlB02 (B:52-425)
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Clan
:
Actin_ATPase
(173)
Family
:
HSP70
(41)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(4)
1a
HSP70-3qmlB01
B:52-425
1b
HSP70-3qmlB02
B:52-425
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Asymmetric Unit 1
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Asym.Unit (442 KB)
Header - Asym.Unit
Biol.Unit 1 (217 KB)
Header - Biol.Unit 1
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