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3QM3
Biol. Unit 1
Info
Asym.Unit (966 KB)
Biol.Unit 1 (246 KB)
Biol.Unit 2 (242 KB)
Biol.Unit 3 (246 KB)
Biol.Unit 4 (245 KB)
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(1)
Title
:
1.85 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF FRUCTOSE-BISPHOSPHATE ALDOLASE (FBA) FROM CAMPYLOBACTER JEJUNI
Authors
:
G. Minasov, Z. Wawrzak, T. Skarina, O. Onopriyenko, L. Papazisi, A. Sav W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date
:
03 Feb 11 (Deposition) - 23 Feb 11 (Release) - 23 Feb 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Beta/Alpha-Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Minasov, Z. Wawrzak, T. Skarina, O. Onopriyenko, L. Papazisi, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 85 Angstrom Resolution Crystal Structure Of Fructose-Bisphosphate Aldolase (Fba) From Campylobacter Jejuni
To Be Published
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
FMT
1
Ligand/Ion
FORMIC ACID
3
GOL
2
Ligand/Ion
GLYCEROL
4
SO4
5
Ligand/Ion
SULFATE ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: EC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:105 , GLU A:169 , HIS A:221 , HIS A:260 , HOH A:362
BINDING SITE FOR RESIDUE ZN A 355
02
AC2
SOFTWARE
GLY A:10 , VAL A:11 , HIS A:89 , HOH A:2006 , HOH A:2887
BINDING SITE FOR RESIDUE FMT A 356
03
AC3
SOFTWARE
LYS A:86 , HIS A:128 , HOH A:2539 , HOH A:2806 , LYS B:86
BINDING SITE FOR RESIDUE SO4 A 357
04
AC4
SOFTWARE
GLY A:261 , GLY A:262 , SER A:263 , ASN A:282 , ILE A:283 , ASP A:284 , THR A:285 , HOH A:1366 , HOH A:1552 , HOH A:3395 , HOH A:3504
BINDING SITE FOR RESIDUE SO4 A 358
05
AC5
SOFTWARE
HIS B:105 , GLU B:169 , HIS B:221 , HIS B:260 , HOH B:2086
BINDING SITE FOR RESIDUE ZN B 355
06
AC6
SOFTWARE
GLY B:10 , VAL B:11 , HIS B:89 , TYR B:124 , HOH B:1484
BINDING SITE FOR RESIDUE GOL B 356
07
AC7
SOFTWARE
ASN B:282 , ILE B:283 , ASP B:284 , THR B:285 , HOH B:1066 , HOH B:1533 , HOH B:1794 , HOH B:1936 , HOH B:2194 , HOH B:2637 , HOH B:3600 , HOH B:3601
BINDING SITE FOR RESIDUE GOL B 357
08
AC8
SOFTWARE
ARG A:327 , HOH A:1263 , SER B:61 , HOH B:520 , HOH B:1614 , HOH B:1796 , HOH B:1965
BINDING SITE FOR RESIDUE SO4 B 358
09
AC9
SOFTWARE
SER A:61 , HOH A:3479 , ARG B:327 , HOH B:385 , HOH B:1328 , HOH B:3219 , HOH B:3553
BINDING SITE FOR RESIDUE SO4 B 359
10
BC1
SOFTWARE
ARG A:331 , GLU A:335 , LYS B:71 , ASN B:72 , LYS G:109
BINDING SITE FOR RESIDUE SO4 B 360
11
EC4
SOFTWARE
LYS A:109 , ARG G:331 , GLU G:335 , LYS H:71 , ASN H:72 , HOH H:3257
BINDING SITE FOR RESIDUE SO4 H 358
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_II_1 (A:95-106,B:95-106)
2: ALDOLASE_CLASS_II_2 (A:166-175,B:166-175)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_II_1
PS00602
Fructose-bisphosphate aldolase class-II signature 1.
ALF_CAMJE
95-106
2
A:95-106
B:95-106
-
-
-
-
-
-
2
ALDOLASE_CLASS_II_2
PS00806
Fructose-bisphosphate aldolase class-II signature 2.
ALF_CAMJE
166-177
2
A:166-175
B:166-175
-
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3qm3a_ (A:)
1b: SCOP_d3qm3b_ (B:)
1c: SCOP_d3qm3c_ (C:)
1d: SCOP_d3qm3d_ (D:)
1e: SCOP_d3qm3e_ (E:)
1f: SCOP_d3qm3f_ (F:)
1g: SCOP_d3qm3g_ (G:)
1h: SCOP_d3qm3h_ (H:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class II FBP aldolase
(9)
Protein domain
:
automated matches
(2)
Campylobacter jejuni [TaxId: 197]
(1)
1a
d3qm3a_
A:
1b
d3qm3b_
B:
1c
d3qm3c_
C:
1d
d3qm3d_
D:
1e
d3qm3e_
E:
1f
d3qm3f_
F:
1g
d3qm3g_
G:
1h
d3qm3h_
H:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_F_bP_aldolase_3qm3H01 (H:13-354)
1b: PFAM_F_bP_aldolase_3qm3H02 (H:13-354)
1c: PFAM_F_bP_aldolase_3qm3H03 (H:13-354)
1d: PFAM_F_bP_aldolase_3qm3H04 (H:13-354)
1e: PFAM_F_bP_aldolase_3qm3H05 (H:13-354)
1f: PFAM_F_bP_aldolase_3qm3H06 (H:13-354)
1g: PFAM_F_bP_aldolase_3qm3H07 (H:13-354)
1h: PFAM_F_bP_aldolase_3qm3H08 (H:13-354)
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Organisms
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)
Clan
:
TIM_barrel
(694)
Family
:
F_bP_aldolase
(7)
Campylobacter jejuni
(1)
1a
F_bP_aldolase-3qm3H01
H:13-354
1b
F_bP_aldolase-3qm3H02
H:13-354
1c
F_bP_aldolase-3qm3H03
H:13-354
1d
F_bP_aldolase-3qm3H04
H:13-354
1e
F_bP_aldolase-3qm3H05
H:13-354
1f
F_bP_aldolase-3qm3H06
H:13-354
1g
F_bP_aldolase-3qm3H07
H:13-354
1h
F_bP_aldolase-3qm3H08
H:13-354
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Asymmetric Unit 1
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